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中国农学通报 ›› 2012, Vol. 28 ›› Issue (28): 158-162.

所属专题: 生物技术

• 林学 园艺 园林 • 上一篇    下一篇

小金海棠缺铁胁迫相关miR394a的克隆与表达分析

于昌江 孙瑞 王忆 张新忠 韩振海   

  • 收稿日期:2012-05-16 修回日期:2012-06-18 出版日期:2012-10-05 发布日期:2012-10-05

Cloning and expression analysis of miR394a under iron deficiency in Malus xiaojinensis

  • Received:2012-05-16 Revised:2012-06-18 Online:2012-10-05 Published:2012-10-05

摘要:

为了研究铁高效植物小金海棠的miRNAs信息及在缺铁处理下miRNA的表达变化,以进一步了解小金海棠缺铁分子调控机制。以改良CTAB法提取的总RNA为模板,从小金海棠中分离得到miR394a。通过Real-time PCR检测miR394a的表达,并利用生物信息学方法预测了miR394a的靶基因及其功能。miR394a具有高度保守性,从小金海棠中分离的miR394a与其他物种的miR394a序列高度相似。缺铁胁迫后,小金海棠的miR394a在根及叶中都有表达,但表达模式有所不同,miR394a在根部响应较为迅速,缺铁处理1天时,即有上调表达;而在叶片的响应较晚,缺铁3天时有上调表达。miR394a的靶基因预测表明,miR394a主要调控转录因子及参与代谢途径的基因。结果表明,miR394a受缺铁胁迫所诱导,参与了小金海棠缺铁调控途径,在缺铁调控中起重要作用。

关键词: 快繁, 快繁

Abstract:

In order to study the miRNAs information and miRNA expressions under iron-deficiency stress of Fe-efficient plant Malus xiaojinensis, to further understand the iron deficiency molecules regulatory mechanism of the Malus xiaojinensis. In this study, miR394a was isolated from total RNA of Malus xiaojinensis which was extracted by the modified CTAB method as a template. miR394a expression pattern was detection by real-time PCR and the target genes and their functions of miR394a were also predicted through the bioinformatics methods. The miR394a was highly conservative which had high homology with other species. miR394a was expressed both in root and leaf under iron deficiency, but the express pattern not the same. miR394 had a quick response in roots, its up regulation was detected after one day of iron deficiency. It had a relatively slow response in leaves, whose up-regulation was detected after three days of iron deficiency. miR394a target genes prediction showed that miR394a was mainly regulation the transcription factors and genes which were participated in metabolic pathways. The results showed that miR394a was induced by iron deficiency stress and played an important role in iron deficiency regulation for involved in the iron deficiency regulatory pathways of Malus xiaojinensis.