中国农学通报 ›› 2022, Vol. 38 ›› Issue (32): 22-31.doi: 10.11924/j.issn.1000-6850.casb2021-1119
收稿日期:
2021-11-23
修回日期:
2022-03-05
出版日期:
2022-11-15
发布日期:
2022-11-09
通讯作者:
王恒明
作者简介:
徐晓美,女,1983年出生,江西吉安人,副研究员,博士,研究方向:茄果类蔬菜疫病及分子育种研究。通信地址:530460 广东省广州市天河区五山镇金颖路66号 蔬菜研究所,Tel:020-38469456,E-mail: 基金资助:
XU Xiaomei(), LI Ying, HENG Zhou, XU Xiaowan, LI Tao, WANG Hengming()
Received:
2021-11-23
Revised:
2022-03-05
Online:
2022-11-15
Published:
2022-11-09
Contact:
WANG Hengming
摘要:
在辣椒基因组中全面鉴定WRKY转录因子并筛选出受辣椒疫霉菌诱导的CaWRKY基因,并分析关键CaWRKY基因参与的信号通路。以CM334和NMCA10399为材料,基于辣椒基因组和RNA-seq数据,并在水杨酸(SA)和茉莉酸甲酯(MeJA)处理下通过qRT-PCR技术检测基因表达并分析。全基因组共鉴定出69个CaWRKY基因。接菌后12 h,抗、感材料中分别鉴定出7个和3个差异表达基因;接菌后36 h,分别有13个和22个差异表达基因,表明抗病材料能更快速应答。在筛选出的8个关键CaWRKY基因中,CaWRKY19和CaWRKY65受SA诱导上调表达;CaWRKY50受MeJA诱导上调表达;CaWRKY25受SA诱导上调表达同时受到MeJA抑制下调表达,而CaWRKY49同时受SA和MeJA抑制下调表达,推测CaWRKY19和CaWRKY65通过SA,CaWRKY50通过JA,而CaWRKY25和CaWRKY49则通过SA和JA信号途径参与辣椒抗疫病防御反应。
中图分类号:
徐晓美, 李颖, 衡周, 徐小万, 李涛, 王恒明. 响应辣椒疫霉菌诱导的CaWRKY转录因子筛选及其信号通路分析[J]. 中国农学通报, 2022, 38(32): 22-31.
XU Xiaomei, LI Ying, HENG Zhou, XU Xiaowan, LI Tao, WANG Hengming. CaWRKY Transcription Factors Induced by Phytophthora capsici: Screening and Signal Pathway Analysis[J]. Chinese Agricultural Science Bulletin, 2022, 38(32): 22-31.
基因 | 正向引物 | 反向引物 |
---|---|---|
IF4G | TGAAATTGGGCGTTTGATAT | TTGCTGGAACCTTGAGGC |
CaWRKY19 | TGGTTCAGCAAGTAGTTATTACAAC | CAACGATAGCCATCATCAAGT |
CaWRKY25 | AAAAGCAAATCACCAGGAGG | ATGGCAGCGGCTAAGGC |
CaWRKY45 | AAGGACAAGGTTGCTTTCAGA | ATTCCTCGGGTTGGGACTAT |
CaWRKY49 | AAATGCGAGAAGTTTGCCA | AATGAACCGAATCTGAGACCA |
CaWRKY50 | GCAATGGCTGATGATGGTT | GGATTGAGAGTGATAAATGGGT |
CaWRKY59 | GGACGGTTTTCGCTGGAG | GCTTGTTTTGGATGCCTCTG |
CaWRKY60 | AGGAAGCGAATACCCAAGAA | GGTTGTGCTCACCCCTGT |
CaWRKY65 | CAAATGTTCAAATGGAGGATG | TTGGGAGGAAACTGTGTGTAG |
基因 | 正向引物 | 反向引物 |
---|---|---|
IF4G | TGAAATTGGGCGTTTGATAT | TTGCTGGAACCTTGAGGC |
CaWRKY19 | TGGTTCAGCAAGTAGTTATTACAAC | CAACGATAGCCATCATCAAGT |
CaWRKY25 | AAAAGCAAATCACCAGGAGG | ATGGCAGCGGCTAAGGC |
CaWRKY45 | AAGGACAAGGTTGCTTTCAGA | ATTCCTCGGGTTGGGACTAT |
CaWRKY49 | AAATGCGAGAAGTTTGCCA | AATGAACCGAATCTGAGACCA |
CaWRKY50 | GCAATGGCTGATGATGGTT | GGATTGAGAGTGATAAATGGGT |
CaWRKY59 | GGACGGTTTTCGCTGGAG | GCTTGTTTTGGATGCCTCTG |
CaWRKY60 | AGGAAGCGAATACCCAAGAA | GGTTGTGCTCACCCCTGT |
CaWRKY65 | CAAATGTTCAAATGGAGGATG | TTGGGAGGAAACTGTGTGTAG |
基因ID | 基因名称 | 所在染色体 | 染色体上起始位置 | 染色体上终止位置 |
---|---|---|---|---|
CA01g01280 | CaWRKY1 | chr01 | 2038374 | 2040069 |
CA01g01680 | CaWRKY2 | chr01 | 2635792 | 2637804 |
CA01g01900 | CaWRKY3 | chr01 | 2893313 | 2895834 |
CA01g01920 | CaWRKY4 | chr01 | 2934404 | 2936271 |
CA01g22410 | CaWRKY5 | chr01 | 173620799 | 173623204 |
CA01g23300 | CaWRKY6 | chr01 | 178453985 | 178455279 |
CA01g28150 | CaWRKY7 | chr01 | 225279658 | 225283932 |
CA01g29700 | CaWRKY8 | chr01 | 250051081 | 250052735 |
CA01g34470 | CaWRKY9 | chr01 | 272194277 | 272196019 |
CA02g01800 | CaWRKY10 | chr02 | 14052835 | 14054439 |
CA02g03480 | CaWRKY11 | chr02 | 49797674 | 49802442 |
Novel01115 | CaWRKY12 | chr02 | 118214309 | 118218517 |
CA02g08530 | CaWRKY13 | chr02 | 118218858 | 118220343 |
CA02g12180 | CaWRKY14 | chr02 | 136862277 | 136863942 |
CA02g13500 | CaWRKY15 | chr02 | 139943611 | 139945054 |
CA02g14640 | CaWRKY16 | chr02 | 143086747 | 143088220 |
CA02g18540 | CaWRKY17 | chr02 | 151618855 | 151621384 |
CA02g27910 | CaWRKY18 | chr02 | 166504218 | 166507090 |
CA02g30960 | CaWRKY19 | chr02 | 170442258 | 170443707 |
CA03g12030 | CaWRKY20 | chr03 | 82433982 | 82437479 |
CA03g12230 | CaWRKY21 | chr03 | 92811236 | 92814009 |
CA03g19220 | CaWRKY22 | chr03 | 211827627 | 211828897 |
CA03g20260 | CaWRKY23 | chr03 | 217281599 | 217282384 |
CA03g25570 | CaWRKY24 | chr03 | 233891387 | 233892619 |
CA03g32070 | CaWRKY25 | chr03 | 249653891 | 249655716 |
CA04g11710 | CaWRKY26 | chr04 | 162338552 | 162339497 |
Novel03044 | CaWRKY27 | chr04 | 194931754 | 194934298 |
CA04g18300 | CaWRKY28 | chr04 | 212723556 | 212725065 |
CA05g11500 | CaWRKY29 | chr05 | 146420117 | 146420996 |
CA05g16160 | CaWRKY30 | chr05 | 220729866 | 220730486 |
CA05g16170 | CaWRKY31 | chr05 | 220959878 | 220962141 |
CA05g20090 | CaWRKY32 | chr05 | 232462416 | 232464735 |
CA06g01330 | CaWRKY33 | chr06 | 2801017 | 2802941 |
CA06g07080 | CaWRKY34 | chr06 | 88222325 | 88224199 |
Novel03968 | CaWRKY35 | chr06 | 149843062 | 149852648 |
CA06g13580 | CaWRKY36 | chr06 | 199697359 | 199699877 |
CA06g19170 | CaWRKY37 | chr06 | 218760356 | 218765212 |
CA07g01910 | CaWRKY38 | chr07 | 7593907 | 7596044 |
CA07g10930 | CaWRKY39 | chr07 | 179165811 | 179171788 |
CA07g11490 | CaWRKY40 | chr07 | 187394877 | 187398007 |
CA07g14560 | CaWRKY41 | chr07 | 212582976 | 212586899 |
CA07g15490 | CaWRKY42 | chr07 | 217673570 | 217676677 |
CA07g20160 | CaWRKY43 | chr07 | 228950907 | 228956419 |
CA07g21030 | CaWRKY44 | chr07 | 230429562 | 230433082 |
CA08g03020 | CaWRKY45 | chr08 | 45567589 | 45568941 |
CA08g04850 | CaWRKY46 | chr08 | 87021432 | 87021689 |
CA08g07730 | CaWRKY47 | chr08 | 124297314 | 124298692 |
CA08g08240 | CaWRKY48 | chr08 | 125184633 | 125186593 |
CA08g15470 | CaWRKY49 | chr08 | 137493798 | 137495717 |
CA09g05110 | CaWRKY50 | chr09 | 29524157 | 29525306 |
CA09g08120 | CaWRKY51 | chr09 | 73185556 | 73187554 |
CA09g11930 | CaWRKY52 | chr09 | 193381139 | 193381634 |
CA09g11940 | chr09 | 193383663 | 193384241 | |
CA09g11950 | chr09 | 193384301 | 193385152 | |
CA09g14010 | CaWRKY53 | chr09 | 235175018 | 235179091 |
CA10g00950 | CaWRKY54 | chr10 | 1523732 | 1526701 |
CA10g06160 | CaWRKY55 | chr10 | 57656265 | 57658438 |
CA10g06890 | CaWRKY56 | chr10 | 74808481 | 74809205 |
Novel06638 | CaWRKY57 | chr10 | 188512255 | 188515493 |
CA10g13480 | CaWRKY58 | chr10 | 200298843 | 200300688 |
CA10g14770 | CaWRKY59 | chr10 | 209137713 | 209140645 |
CA10g14950 | CaWRKY60 | chr10 | 210996708 | 210999594 |
CA11g03750 | CaWRKY61 | chr11 | 13325085 | 13330079 |
CA11g05370 | CaWRKY62 | chr11 | 27635502 | 27639396 |
CA11g12710 | CaWRKY63 | chr11 | 211487525 | 211488930 |
CA12g09140 | CaWRKY64 | chr12 | 54306159 | 54310140 |
CA12g09290 | CaWRKY65 | chr12 | 55250412 | 55250606 |
CA12g19100 | CaWRKY66 | chr12 | 227576691 | 227578248 |
CA12g19110 | CaWRKY67 | chr12 | 227663305 | 227664562 |
CA12g19120 | CaWRKY68 | chr12 | 227671495 | 227672863 |
CA12g19130 | CaWRKY69 | chr12 | 227691600 | 227693022 |
基因ID | 基因名称 | 所在染色体 | 染色体上起始位置 | 染色体上终止位置 |
---|---|---|---|---|
CA01g01280 | CaWRKY1 | chr01 | 2038374 | 2040069 |
CA01g01680 | CaWRKY2 | chr01 | 2635792 | 2637804 |
CA01g01900 | CaWRKY3 | chr01 | 2893313 | 2895834 |
CA01g01920 | CaWRKY4 | chr01 | 2934404 | 2936271 |
CA01g22410 | CaWRKY5 | chr01 | 173620799 | 173623204 |
CA01g23300 | CaWRKY6 | chr01 | 178453985 | 178455279 |
CA01g28150 | CaWRKY7 | chr01 | 225279658 | 225283932 |
CA01g29700 | CaWRKY8 | chr01 | 250051081 | 250052735 |
CA01g34470 | CaWRKY9 | chr01 | 272194277 | 272196019 |
CA02g01800 | CaWRKY10 | chr02 | 14052835 | 14054439 |
CA02g03480 | CaWRKY11 | chr02 | 49797674 | 49802442 |
Novel01115 | CaWRKY12 | chr02 | 118214309 | 118218517 |
CA02g08530 | CaWRKY13 | chr02 | 118218858 | 118220343 |
CA02g12180 | CaWRKY14 | chr02 | 136862277 | 136863942 |
CA02g13500 | CaWRKY15 | chr02 | 139943611 | 139945054 |
CA02g14640 | CaWRKY16 | chr02 | 143086747 | 143088220 |
CA02g18540 | CaWRKY17 | chr02 | 151618855 | 151621384 |
CA02g27910 | CaWRKY18 | chr02 | 166504218 | 166507090 |
CA02g30960 | CaWRKY19 | chr02 | 170442258 | 170443707 |
CA03g12030 | CaWRKY20 | chr03 | 82433982 | 82437479 |
CA03g12230 | CaWRKY21 | chr03 | 92811236 | 92814009 |
CA03g19220 | CaWRKY22 | chr03 | 211827627 | 211828897 |
CA03g20260 | CaWRKY23 | chr03 | 217281599 | 217282384 |
CA03g25570 | CaWRKY24 | chr03 | 233891387 | 233892619 |
CA03g32070 | CaWRKY25 | chr03 | 249653891 | 249655716 |
CA04g11710 | CaWRKY26 | chr04 | 162338552 | 162339497 |
Novel03044 | CaWRKY27 | chr04 | 194931754 | 194934298 |
CA04g18300 | CaWRKY28 | chr04 | 212723556 | 212725065 |
CA05g11500 | CaWRKY29 | chr05 | 146420117 | 146420996 |
CA05g16160 | CaWRKY30 | chr05 | 220729866 | 220730486 |
CA05g16170 | CaWRKY31 | chr05 | 220959878 | 220962141 |
CA05g20090 | CaWRKY32 | chr05 | 232462416 | 232464735 |
CA06g01330 | CaWRKY33 | chr06 | 2801017 | 2802941 |
CA06g07080 | CaWRKY34 | chr06 | 88222325 | 88224199 |
Novel03968 | CaWRKY35 | chr06 | 149843062 | 149852648 |
CA06g13580 | CaWRKY36 | chr06 | 199697359 | 199699877 |
CA06g19170 | CaWRKY37 | chr06 | 218760356 | 218765212 |
CA07g01910 | CaWRKY38 | chr07 | 7593907 | 7596044 |
CA07g10930 | CaWRKY39 | chr07 | 179165811 | 179171788 |
CA07g11490 | CaWRKY40 | chr07 | 187394877 | 187398007 |
CA07g14560 | CaWRKY41 | chr07 | 212582976 | 212586899 |
CA07g15490 | CaWRKY42 | chr07 | 217673570 | 217676677 |
CA07g20160 | CaWRKY43 | chr07 | 228950907 | 228956419 |
CA07g21030 | CaWRKY44 | chr07 | 230429562 | 230433082 |
CA08g03020 | CaWRKY45 | chr08 | 45567589 | 45568941 |
CA08g04850 | CaWRKY46 | chr08 | 87021432 | 87021689 |
CA08g07730 | CaWRKY47 | chr08 | 124297314 | 124298692 |
CA08g08240 | CaWRKY48 | chr08 | 125184633 | 125186593 |
CA08g15470 | CaWRKY49 | chr08 | 137493798 | 137495717 |
CA09g05110 | CaWRKY50 | chr09 | 29524157 | 29525306 |
CA09g08120 | CaWRKY51 | chr09 | 73185556 | 73187554 |
CA09g11930 | CaWRKY52 | chr09 | 193381139 | 193381634 |
CA09g11940 | chr09 | 193383663 | 193384241 | |
CA09g11950 | chr09 | 193384301 | 193385152 | |
CA09g14010 | CaWRKY53 | chr09 | 235175018 | 235179091 |
CA10g00950 | CaWRKY54 | chr10 | 1523732 | 1526701 |
CA10g06160 | CaWRKY55 | chr10 | 57656265 | 57658438 |
CA10g06890 | CaWRKY56 | chr10 | 74808481 | 74809205 |
Novel06638 | CaWRKY57 | chr10 | 188512255 | 188515493 |
CA10g13480 | CaWRKY58 | chr10 | 200298843 | 200300688 |
CA10g14770 | CaWRKY59 | chr10 | 209137713 | 209140645 |
CA10g14950 | CaWRKY60 | chr10 | 210996708 | 210999594 |
CA11g03750 | CaWRKY61 | chr11 | 13325085 | 13330079 |
CA11g05370 | CaWRKY62 | chr11 | 27635502 | 27639396 |
CA11g12710 | CaWRKY63 | chr11 | 211487525 | 211488930 |
CA12g09140 | CaWRKY64 | chr12 | 54306159 | 54310140 |
CA12g09290 | CaWRKY65 | chr12 | 55250412 | 55250606 |
CA12g19100 | CaWRKY66 | chr12 | 227576691 | 227578248 |
CA12g19110 | CaWRKY67 | chr12 | 227663305 | 227664562 |
CA12g19120 | CaWRKY68 | chr12 | 227671495 | 227672863 |
CA12g19130 | CaWRKY69 | chr12 | 227691600 | 227693022 |
比较组合 | 显著差异上调表达基因 | 显著差异下调表达基因 |
---|---|---|
S12334 vs S0334 | CaWRKY19、CaWRKY45、CaWRKY49、CaWRKY65 | CaWRKY50、CaWRKY59、CaWRKY60 |
S36334 vs S0334 | CaWRKY10、CaWRKY19、CaWRKY21、CaWRKY25、CaWRKY27、CaWRKY31、CaWRKY45、CaWRKY49、CaWRKY52、CaWRKY63、CaWRKY65 | CaWRKY60、CaWRKY64 |
S12399 vs S0399 | CaWRKY27、CaWRKY45、CaWRKY49 | 无 |
S36399 vs S0399 | CaWRKY1、CaWRKY4、CaWRKY5、CaWRKY9、CaWRKY10、CaWRKY16、CaWRKY19、CaWRKY21、CaWRKY22、CaWRKY27、CaWRKY29、CaWRKY31、CaWRKY45、CaWRKY49、CaWRKY52、CaWRKY57、CaWRKY63、CaWRKY65 | CaWRKY43、CaWRKY59、CaWRKY60、CaWRKY64 |
CM334特有显著 差异表达基因 | CaWRKY25 | CaWRKY50 |
NMCA10399特有显著 差异表达基因 | CaWRKY1、CaWRKY4、CaWRKY5、CaWRKY9、CaWRKY16、CaWRKY22、CaWRKY29、CaWRKY57 | CaWRKY43 |
比较组合 | 显著差异上调表达基因 | 显著差异下调表达基因 |
---|---|---|
S12334 vs S0334 | CaWRKY19、CaWRKY45、CaWRKY49、CaWRKY65 | CaWRKY50、CaWRKY59、CaWRKY60 |
S36334 vs S0334 | CaWRKY10、CaWRKY19、CaWRKY21、CaWRKY25、CaWRKY27、CaWRKY31、CaWRKY45、CaWRKY49、CaWRKY52、CaWRKY63、CaWRKY65 | CaWRKY60、CaWRKY64 |
S12399 vs S0399 | CaWRKY27、CaWRKY45、CaWRKY49 | 无 |
S36399 vs S0399 | CaWRKY1、CaWRKY4、CaWRKY5、CaWRKY9、CaWRKY10、CaWRKY16、CaWRKY19、CaWRKY21、CaWRKY22、CaWRKY27、CaWRKY29、CaWRKY31、CaWRKY45、CaWRKY49、CaWRKY52、CaWRKY57、CaWRKY63、CaWRKY65 | CaWRKY43、CaWRKY59、CaWRKY60、CaWRKY64 |
CM334特有显著 差异表达基因 | CaWRKY25 | CaWRKY50 |
NMCA10399特有显著 差异表达基因 | CaWRKY1、CaWRKY4、CaWRKY5、CaWRKY9、CaWRKY16、CaWRKY22、CaWRKY29、CaWRKY57 | CaWRKY43 |
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