中国农学通报 ›› 2019, Vol. 35 ›› Issue (12): 124-129.doi: 10.11924/j.issn.1000-6850.casb18110010
所属专题: 园艺
耿 贵1, 吕春华2, 於丽华1, 李任任1, 王宇光3
收稿日期:
2018-11-05
修回日期:
2019-03-15
接受日期:
2018-12-06
出版日期:
2019-04-26
发布日期:
2019-04-26
通讯作者:
王宇光
基金资助:
Received:
2018-11-05
Revised:
2019-03-15
Accepted:
2018-12-06
Online:
2019-04-26
Published:
2019-04-26
摘要: 转录组学、蛋白组学、基因组学和代谢组学等组学技术具有高通量、高灵敏度和系统性等优点,已成为在分子水平上研究植物应对生物胁迫和非生物胁迫的强有力工具。本研究综述了近年来国内外在甜菜组学技术方面的相关研究,包括甜菜在生物和非生物胁迫下的抗逆分子机理研究、细胞质雄性不育(CMS)结构基因和基因辅助甜菜育种功能研究,这些研究对于培育优良甜菜品种具有重要的理论价值。下一步应加强多种组学结合的研究策略,并结合基因功能鉴定发掘更多的甜菜优质基因资源。
耿 贵,吕春华,於丽华,李任任,王宇光. 甜菜组学技术研究进展[J]. 中国农学通报, 2019, 35(12): 124-129.
[1] H Liu, QQ Wang, MM Yu, et al. Transgenic salt-tolerant sugar beet (Beta vulgaris L.) constitutively expressing an Arabidopsis thaliana vacuolar Na+/H+ antiporter gene, AtNHX3, accumulates more soluble sugar but less salt in storage roots[J]. Plant, Cell and Environment, 2008(31): 1325-1334. [2] N. TERRY. Developmental Physiology of Sugar Beet: I. THE INFLUENCE OF LIGHT AND TEMPERATURE ON GROWTH[J]. Journal of Experimental Botany, 1968, 19(4): 795-811. [3] Eric S. Ober, Mich Le Blo, Chris J. A. Clark, et al. Evaluation of physiological traits as indirect selection criteria for drought tolerance in sugar beet[J]. Field Crops Research, 2005, 91(2): 231-249. [4] Wang YG, Piergiorgio Stevanat, Yu LH, et al. The physiological and metabolic changes in sugar beet seedlings under different levels of salt stress[J]. J Plant Res, 2017, 130(6): 1079-1093. [5] E. J. HEWITT. Metal Interrelationships in Plant Nutrition: I. EFFECTS OF SOME METAL TOXICITIES ON SUGAR BEET, TOMATO, OAT, POTATO, AND MARROWSTEM KALE GROWN IN SAND CULTURE[J]. Journal of Experimental Botany, 1953, 4(1): 59-64. [6] Ioannis Panagopoulos, Janet F. Bornman, Lars Olof Bj?rn. Response of sugar beet plants to ultraviolet‐B (280–320nm) radiation and Cercospom leaf spot disease[J]. Physiologia Plantarum, 1992(84): 140-145. [7] Dita MA, Rispail N, Prats E, et al. Biotechnology approaches to overcome biotic and abiotic stress constraints in legumes[J]. Euphytica, 2006(147): 1-24. [8] Juliane C. Dohm, André E. Minoche, Daniela Holtgr?we. The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) [J]. Nature, 2014(505): 546-549. [9] FuqiangSYin, JianSGao, MingSLiu, et al. Genomewide analysis of water-stress-responsive microRNA expression pro?le in tobacco roots[J]. Funct. Integr. Genomics, 2014(14):,319-332. [10] Yushi Luan, Jun Cui, Junmiao Zhai, et al. High-throughput sequencing reveals di?erential expression of miRNAs in tomato inoculated with Phytophthora infestans[J]. Planta, 2015(241): 1405-1416. [11] Hamilton, J. P, C. R Buell. Advances in plant genome sequencing[J]. Plant J, 2012, 70 (1): 177-90. [12] Bala Ani Akpinar, Melda Kantar,Hikmet Budak. Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress[J]. Functional integrative genomics, 2015, 15(5): 587-598. [13] Cecilia Silva‐Sanchez, Haiying Li, Sixue Chen. Recent advances and challenges in plant phosphoproteomics[J]. Proteomics, 2015, 15(5): 1127-1141. [14] Isabelle Benoit, Miaomiao Zhou, Alexandra Vivas Duarte. Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization[J]. Scientific reports, 2015: 13592. [15] Mikael Broche, BasiaSVinocur, EdwardSRSAlatalo, et al. Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert[J]. Genome Biol, 2005,12(6). [16] Ki Hong Jung, Gynheung An, Pamela C. Ronald. Towards a better bowl of rice: Assigning function to tens of thousands of rice genes[J]. Nature Reviews Genetics, 2008(9): 91-101. [17] Karen Klotz Fugate, Diego Fajardo, Brandon Schlautman, et al. Generation and Characterization of a Sugarbeet Transcriptome and Transcript-Based SSR Markers[J]. original research, 2014, 7(2): 1-12. [18] D. Bellin, M. Werber, T. Theis, et al. EST Sequencing, Annotation and Macroarray Transcriptome Analysis Identify Preferentially Root‐Expressed Genes in Sugar Beet[J]. 2008, 4(6): 700-710. [19] Daniele Trebbi, J. Mitchell McGrath. Functional differentiation of the sugar beet root system as indicator of developmental phase change. [J] Physiologia Plantarum, 2009, 135(1): 84-97. [20] Vinoy K Ramachandran, Alison K East, Ramakrishnan Karunakaran, et al. Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics[J]. Genome Biology, 2011, 12: R106. [21] Effie S Mutasa-G?ttgens, Anagha Joshi, Helen F Holmes. A new RNASeq-based Reference transcriptome for sugar beet and its application in transcriptomescale analysis of vernalization and gibberellin responses[J]. BMC Genomics, 2012, 13: 99. [22] 李鹤男.DDRT-PCR技术分析甜菜盐胁迫下相关基因差异表达[D]. 哈尔滨: 哈尔滨工业大学, 2013. [23] Le Yang, Chunquan Ma, Linlin Wang, et al. Salt stress induced proteome and transcriptome changes in sugar beet monosomic addition line M14[J]. Journal of Plant Physiology, 2012, 169(9): 839-850. [24] 吕笑言, 金英. 利用生物信息学技术构建分析甜菜M14品系盐胁迫下参考转录组数据库[J]. 黑龙江大学自然科学学报, 2017, 34(2): 208-212. [25] 端木慧子, 陶鑫, 王建慧, 等. 甜菜M14品系盐胁迫转录组数据库的转录因子分析[J]. 黑龙江大学工程学报. 2017, 8(4): 48-54. [26] 孔维龙, 于坤, 但乃震, 等. 甜菜WRKY转录因子全基因组鉴定及其在非生物胁迫下的表达分析[J]. 中国农业科学, 2017, 50(17): 3259-3273. [27] 李国龙, 吴海霞, 孙亚卿. 甜菜NAC转录因子BvNAC46基因的克隆及植物表达载体的构建[J]. 分子植物育种, 2018, 16(13): 4270-4278. [28] Huiyan Fan, Haiwen Sun, Ying Wang, et al. Deep Sequencing-Based Transcriptome Profiling Reveals Comprehensive Insights into the Responses of Nicotiana benthamiana to Beet necrotic yellow vein virus Infections Containing or Lacking RNA4[J]. Plos one, 2014, 9(1): e85284. [29] Fridtjof Weltmeier, Anja M?ser, Andreas Menze, et al. Transcript Profiles in Sugar Beet Genotypes Uncover Timing and Strength of Defense Reactions to Cercospora beticola Infection[J]. The American Phytopathological Society, 2011, 27(7): 758-772. [30] 彭春雪. 干旱胁迫下甜菜生理及蛋白质组差异分析[D]. 哈尔滨: 黑龙江大学, 2013. [31] Mohsen Hajheidari, Mohammad Abdollahian‐Noghabi, Hossein Askari. Proteome analysis of sugar beet leaves under drought stress[J]. Congress Taipei, Taiwan, 2004, 5(4): 14-17. [32] 李国龙, 吴海霞, 孙亚卿, 等. 甜菜叶片应答干旱胁迫的差异蛋白质组学分析[J]. 作物杂志, 2015(5): 63-68. [33] Abdul Wakeel, Abdul R.Asif, BrittaPitanna, et al. Proteome analysis of sugar beet (Beta vulgaris L.) elucidates constitutive adaptation during the first phase of salt stress[J]. Journal of Plant Physiology, 2011, 168(6): 519-526. [34] 田庆斌,崔杰,孙宗艳,等.甜菜盐胁迫相关蛋白的初步筛选[J].中国甜菜糖业,2016(2):1-3. [35] Le Yang, Yanjun Zhang, Ning Zhu, et al. Proteomic Analysis of Salt Tolerance in Sugar Beet Monosomic Addition Line M14[J]. J. Proteome Res, 2013(12): 4931?4950. [36] Haiying Li, YuPana, Yongxue Zhang, et al. Salt stress response of membrane proteome of sugar beet monosomic addition line M14[J]. Journal of Proteomics, 2015, 127(8): 18-33. [37] Haiying Li, Hongxiang Cao, Yuguang Wang, et al. Proteomic analysis of sugar beet apomictic monosomic addition line M14[J]. J. Proteomics, 2009(73): 297-308. [38] Bing Yu, Jinna Li, JinKoh, et al. Quantitative proteomics and phosphoproteomics of sugar beet monosomic addition line M14 in response to salt stress[J]. Journal of Proteomics, 2016, 143(30): 286-297. [39] Vera V Chelyshev, Irina N Smolenskaya, Marina C Trofimova, et al. Role of the 14‐3‐3 proteins in the regulation of H+‐ATPase activity in the plasma membrane of suspension‐cultured sugar beet cells under cold stress[J]. 1999, 456(1): 22-26. [40] Kimberly M. Webb, Carolyn J. Broccardo, Jessica E. Prenni, et al. Proteomic profiling of sugar beet (Beta vulgaris) leaves during rhizomania compatible interactions[J]. Proteomes, 2014, 2(2), 208-223. [41] Rebecca L. Larson, William M. Wintermantel, Amy Hill, et al. Proteome changes in sugar beet in response to Beet necrotic yellow vein virus[J]. Physiological and Molecular Plant Pathology, 2008(72): 62-72. [42] Elain Gutierrez-Carbonell, Giuseppe Lattanzio, Ruth Sagardoy, et al. Changes induced by zinc toxicity in the 2-DE protein profile of sugar beet roots[J]. Journal of Proteomics, 2013, 94(6): 149-161. [43] Rajeev K. Varshney, David A. Hoisington, Akhilesh K. Tyagi. Advances in cereal genomics and applications in crop breeding[J]. Trends in Biotechnology, 2006, 24(11): 490-499. [44] Tobias Wurschum, Jochen C Reif, Thomas Kraft, et al. Genomic selection in sugar beet breeding populations[J]. BMC Genetics, 2013(14): 85. [45] Juliane C. Dohm, Cornelia Lange, Daniela Holtgra, et al. Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris) [J]. The Plant Journal, 2012(70): 528-540. [46] Yanyan Tian, Longjiang Fan, Tim Thurau, et al. The Absence of TIR-Type Resistance Gene Analogues in the Sugar Beet (Beta vulgaris L.) Genome[J]. J Mol Evol, 2004(58): 40-53. [47] Han Li, Hua Cao, Yan-Fei Cai, et al. The complete chloroplast genome sequence of sugar beet (Beta vulgaris ssp. vulgaris) [J]. Mitochondrial DNA, 2014, 25(3): 209-211. [48] MarinusSJMSSmulders, GSDannySEsselink, IsabelleSEveraert, et al. Characterisation of sugar beet (Beta vulgaris L. ssp. vulgaris) varieties using microsatellite markers[J]. BMC Genetics, 2010(11): 41. [49] Sandra Hunger, Gabriele Di Gaspero, Silke M?hring, et al. Isolation and linkage analysis of expressed disease-resistance gene analogues of sugar beet (Beta vulgaris L.) [J]. Genome, 2003(46): 70-82. [50] T.SKubo, S.SNishizawa, T.SMikami, et al. Alterations in organization and transcription of the mitochondrial genome of cytoplasmic male sterile sugar beet (Beta vulgaris L.) [J]. Molecular and General Genetics, 1999, 262(2): 283-290. [51] MizuhoSSatoh, TomohikoSKubo, TetsuoSMikami. The Owen mitochondrial genome in sugar beet (Beta vulgaris L.): possible mechanisms of extensive rearrangements and the origin of the mitotype-unique regions[J]. Theoretical and Applied Genetics, 2006, 113(3): 477-484. [52] M.SSatoh, T.SKubo, S.SNishizawa, et al. The cytoplasmic male-sterile type and normal type mitochondrial genomes of sugar beet share the same complement of genes of known function but differ in the content of expressed ORFs[J]. Molecular Genetics and Genomics, 2004, 272(3): 247-256. [53] MasayukiSP.SYamamoto, TomohikoSKubo, TetsuoSMikami. The 5′-leader sequence of sugar beet mitochondrial atp6 encodes a novel polypeptide that is characteristic of Owen cytoplasmic male sterility[J]. Molecular genetics and genomics, 2005, 273,(4): 342-349. [54] Hieter, P., Boguski, M. Functional genomics: It’s all how you read it[J]. Science, 1997(278): 601–602. [55] RalfSStracke, DanielaSHoltgr?we, JessicaSSchneider, et al. Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris) [J]. BMC Plant Biology, 2014(14): 249. [56] F. Pelsy, D. Merdinoglu. Identification and mapping of random amplified polymorphic DNA markers linked to a rhizomania resistance gene in sugar beet (Beta vulgaris L.) by bulked segregant analysis[J]. 1996, 115(5): 371-377. [57] T.SSchmidt, S.SKubis, J.SS.SHeslop-Harrison, et al. Analysis and chromosomal localization of retrotransposons in sugar beet (Beta vulgaris L.): LINEs and Ty1-copia-like elements as major components of the genome[J]. Chromosome Research, 1995, 3(6): 335-345. [58] BenjaminSStich, Hans-PeterSPiepho, BrittaSSchulz, et al. Multi-trait association mapping in sugar beet (Beta vulgaris L.) [J]. Theoretical and Applied Genetics, 2008, 117(6): 947-954. [59] V. Laurent, P. Devaux, T. Thiel, et al. Comparative effectiveness of sugar beet microsatellite markers isolated from genomic libraries and GenBank ESTs to map the sugar beet genome[J]. Theoretical and Applied Genetics, 2007, 115(6): 793-805. [60] Francesca De Marchis, Yongxin Wang, Piergiorgio Stevanato, et al. Genetic transformation of the sugar beet plastome[J]. Transgenic Res, 2009(18):17-30. [61] E. Barzen, W. Mechelke, E. Ritter, et al. RFLP markers for sugar beet breeding: chromosomal linkage maps and location of major genes for rhizomania resistance, monogermy and hypocotyl colour[J]. The Plant Journal, 1992, 2(4): 601-611. [62] E. Hagihara, N. Itchoda, Y. Habu, et al. Molecular mapping of a fertility restorer gene for Owen cytoplasmic male sterility in sugar beet[J]. Theor Appl Genet, 2005, 111(2): 250-255. [63] Nicolas Schauer, Alisdair R. Fernie. Plant metabolomics: Towards biological function and mechanism[J]. Trends in Plant Science, 2006, 11(10): 508-516. [64] Capuano, Edoardo, Boerrigter-Eenling, et al. Analytical authentication of organic products: an overview of markers[J]. J. Sci.,Food Agric., 2013, 93(1): 12-28. [65] Heiko Rischer, Matej Oresic, Tuulikki Seppa nen-Laakso, et al. Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells[J]. Proc. Natl. Acad. Sci. USA, 2006,103(14): 5614-5619. [66] Renata Kazimierczak, Ewelina Hallmann, Janusz Lipowski, et al. Beetroot (Beta vulgaris L.) and naturally fermentedbeetroot juices from organic and conventional production: metabolomics, antioxidant levels and anticancer activity[J]. J. Sci. Food Agric., 2014(94): 2618-2629. |
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