Research Progress on Main Functional Microorganisms in Forest Ecosystems

doi:10.11924/j.issn.1000-6850.2014-1458

Abstract

Abstract: Forest soil microorganism is an important part of ecosystem and its structure and function play an important role on material cycle. In this paper, we introduced the variation of main functional microbial community structure diversity in different forest types, and the roles of functional microorganism in forest ecosystem; summarized the research progress on the main functional microorganisms such as ammoniaoxidizing microorganisms, methanogenic archaea, methane-oxidizing bacteria, denitrifying bacteria and fungi; and analyzed the influences of forest vegetations and soil physical and chemical characteristics on forest functional microorganisms. In conclusion, we suggested the research development directions for forest functional microorganism.

References

[1] Elsas J Dvan, SmallaK. Extraction of microbial community DNA from soils In: Akkermans ADL, van Elsas J D, de Bruijn FJ1 eds1 Molecular Microbial Ecology Manual Kluwer Academic Publishers, 1995
[2] Elsas JDvan, DuarteGF, RosadoAS, et al. Microbiological and molecular biological methods for monitoringmicrobial inoculants and their effects in the soil environment1 Jour1 Microbial1 Methods, 1998, 32: 133~154
[3] Horton TR, BrunsTD. Themolecular revolution in ectomycorrhizal ecology: Peeking into theblack-box1 Molecular Ecology, 2001, 10: 1855~1871
[4]张腊梅.肥料农药和重金属对紫色水稻土壤微生物特性的影响. 西南大学学报,2007,6:1-2.
[5]曹万举, 隋心, 韩士杰, 等. 分子生物学技术在土壤微生物多样性中的应用. 生物过程，2013. 3, 23-28.
[6]郑华，欧阳志云，王效科, 等. 不同森林恢复类型对土壤微生物群落的影响. 应用生态学报, 15(11): 2019~2024
[7]杨红. 长白山自然保护区北坡森林土壤真菌种群及其多样性研究. 沈阳农业大学，2009
[8]姜海燕. 大兴安岭兴安落叶松林土壤微生物与土壤酶活性研究. 内蒙古农业大学, 2010
[9]Kowalchuk G A, Stephen J R. Ammonia-oxidizing Bacteria: A Model for Molecular Microbial Ecology[J].Annual Review of Microbiology, 2001, 55(1): 485-529.
[10]刘卜榕. 亚热带四种主要森林土壤氨氧化微生物群落结构及多样性研究. 浙江农林大学，2012.
[11]田甜. 毛竹林土壤氨氧化微生物功能基因多样性. 浙江农林大学, 2011.
[12] ZHANG LM, WANGM, PROSSER J I. Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest. FEMS Microbiology Ecology, 70: 52-61.
[13]Hanson R S, Hanson T E. Mehtantotrophic bacteria. Microbiological Reviews, 1996, 60(2) : 439-471.
[14]Lowe D C. Global change: a green source of surpise. Nature, 2006, 439(7073): 148-149.
[15]王芸，郑华，陈法霖等. 湿地松和马尾松人工林土壤甲烷代谢微生物群落的结构特征. 生态学报. 2012, 32(8): 2458-2465.
[16]Zheng Y, Liu X Z, Zhang L M, et.al. Do land utilization patterns affect methanotrophic communities in a Chinese upland red soil?
[17]Knief C, Vanitchung S, Harvey N W, et.al. Diversity of methanotrophic bacteria in tropical unland soils under different land uses. Applied and Environmental Microbiology, 2005, 71(7):3826-3831.
[18]Aronson E L, Helliker B R. Methane flux in non-wetland soils in response to nitrogen addition: a meta-analysis. Ecology, 2010, 91(11): 3242-3251.
[19]Wilshusen J H, Hettiaratchi J P A, De V A, et. al. Methane oxidation and formation of EPS in compost: effect of oxygen concentration[J]. Environ. Poll., 2004, 129: 305-314.
[20]Bussmann I, Rahalkar M, Schink B. Cultivation of methanotrophic bacteria in opposing gradients of methane and oxygen. FEMS Microbiol. Ecol., 2006, 56: 331-344.
[21]Jetten M SM, Logemann S, Muyzer G, et al. Novel principles in the microbial conversion of nitrogen compounds. Antonie. Van. L eeuwenhoek, 1997, 71, 75-93.
[22]Braker G, Fesefeldt A, Witzel K P. Development of PCR prim -er systems for amplification of nitrite reductase genes ( nirK and nirS ) to detect denitrifying bacteria in environmental samples. Applied and Environmental Microbiology, 1998, 64(10): 3769 - 3775.
[23]Scala D J, Kerkhof L J. Nitrous oxide reductase (nosZ) gene specific PCR primers for detection of denitrifies and three nosZ genes from marine sediments. FEMS Microbiology Letters, 1998, 162(1): 61-6
[24]Anderson J, Domsch K H. Quantification of bacterial and fungal contributions to soil respiration. Arch. Mikrobiol., 1973, 93: 113-127.
[25]Davidson EA, Hart SC, Firestone MK. Internal cycling of nitrate in soils of a mature coniferous forest. Ecology, 1992, 73: 1148-1156.
[26]Dong Cheol Seo, DeLaune R D. Fungal and bacterial mediated denitrification in wetlands: Influence of sediment red ox condition. Water Research, 2010, 44: 2 441-2 450.
[27]胡亚林, 汪思龙, 黄宇, 等. 凋落物化学组成对土壤微生物学性状及土壤酶活性的影响．生态学报，2005，25(10)：2663-2668．
[28]姜海燕, 闫伟. 大兴安岭兴安落叶松林土壤微生物分布特征. 浙江林学院学报. 2010， 27(2): 228- 232.
[29]郑华, 欧阳志云, 王效科, 等. 不同森林恢复类型对土壤微生物群落的影响. 应用生态学报. 2004,15(11)∶2019-2024.
[30]賀敏, 刘增文, 李亮. 陕北地区阔叶树种枯落叶对针叶纯林土壤微生物的影响. 西北林学院学报2010, 25(3): 7-11.
[31] Sonu S, NanditaG, Singh K P. Variations in soil microbial biomass and crop roots due to differ in resource quality in-puts in a tropical dry land agro ecosystem. Soil Biology and Biochemistry, 2007, 39: 76-86.
[32]Harte J C and KinzigA P. Mutualism and competition between plants and decomposers: implications for nutrient allocations in ecosystems. American Nature, 1993, 141: 829-846.
[33]Smolander A, Priha O, Paavolainen L, et al. Nitrogen and carbon transformations before and after clear-cutting in repeatedly N-fertilized and limed forest soil. Soil Biology& Biochemistry, 1998, 4: 477-490.
[34]何振立.土壤微生物量及其在养分循环和环境质量评价中的意义. 土壤, 1997(2): 61-67.
[35]Lipson D A, Schmidt S K, Monson R K. Links between microbial population dynamics and nitrogen availability in an alpine ecosystem. Ecology, 1999, 80: 1623-1631.
[36]Dick RP, Rasmussen PE, Kerle EA.1988.Influence of long-term residue management on soil enzyme activity in relation to soil chemical properties of a wheat-fallow system. Biology and Fertility of Soils, 6: 159-164.
[37]潘维旺, 李景英, 周启水, 阮若江. 土壤微生物与森林环境因子关系初探. 南昌水专学报, 1998, 17(4): 38-41.