Resource Distribution, New Species and Isolation Methods of Actinobacteria in Saline-alkali Soil

doi:10.11924/j.issn.1000-6850.casb2021-0840

Abstract

Abstract:

Saline-alkali soil actinomycetes are highly resistant to stress. They are extremophiles that exist in high-salt and high-alkali areas. Their special physiological mechanisms and diversified metabolites have attracted wide attention in various fields. To effectively study the resources of actinomycetes in saline-alkali soil and their functional genes, it is important to fully understand the diversity of actinomycetes’ species in saline-alkali soil, and then choose the most suitable isolation method. This article summarized the geographical distribution and resource diversity of actinomycetes in saline-alkali soil in China, counted the new species of actinomycetes in saline-alkali soil from 2000 to 2021, summed up the main isolation and screening methods of actinomycetes in saline-alkali soil, and put forward a prospect for the future research work.

Key words: actinobacteria in saline-alkali soil, resource distribution, new species, isolation and screening

CLC Number:

Q938.2

LUO You, XIAO Yang, ZHOU Tingyu, WANG Yue, XIE Chen, LI Dongying, CHEN Xueli. Resource Distribution, New Species and Isolation Methods of Actinobacteria in Saline-alkali Soil[J]. Chinese Agricultural Science Bulletin, 2022, 38(25): 79-84.

Figures/Tables 2

References 56

[1]	王智颖. 松嫩平原盐碱地分布及空间变化研究[D]. 哈尔滨: 哈尔滨师范大学, 2020:1-3.
[2]	李彬, 王志春, 孙志高, 等. 中国盐碱地资源与可持续利用研究[J]. 干旱地区农业研究, 2005(2):154-158.
[3]	ZHANG Y G, LIU Q, WANG H F, et al. Haloactinopolyspora alkaliphila sp. nov., and emended description of the genus Haloactinopolyspora[J]. International journal of systematic and evolutionary microbiology, 2014, 64:1945-1951.
[4]	MOHAMAD O, LI L, MA J B, et al. Halophilic actinobacteria biological activity and potential applications[A]. EGAMBERDIEVA Dilfuza, BIRKELAND Nils-Kåre, PANOSYAN Hovik, et al. Extremophiles in Eurasian Ecosystems: Ecology, Diversity, and Applications[M]. 2018:333-364.
[5]	吴祥. 浅谈我国盐渍土的分布、成因以及危害[J]. 农业灾害研究, 2020, 10(8):90-91.
[6]	PAN Y Y, HUANG H P, MENG J, et al. Biodiversity of culturable halotolerant and halophilic bacteria isolated from saline-alkaline soils in Songnen Plain[J]. Acta microbiologica sinica, 2012, 52(10):1187-1194.
[7]	GUAN T W, YING L, ZHAO K, et al. Actinopolyspora xinjiangensis sp. nov. a novel exteremely halophilic actinomycete isolated from a salt lake in Xinjiang, China[J]. Antonie Van Leeuwenhoek, 2010, 98(4):447-453.
[8]	TANG S K, WANG Y, KLENK H P, et al. Actinopolyspora alba sp. nov. and Actinopolyspora erythraea sp. nov. isolated from a salt field, and reclassification of Actinopolyspora iraqiensis Ruan et al. 1994 as a heterotypic synonym of Saccharomonospora halophila[J]. International journal of systematic and evolutionary microbiology, 2011, 61(7):1693-1698.
[9]	GUAN T W, WEI B, ZHANG Y, et al. Actinopolyspora lacussalsi sp. nov. an extremely halophilic actinomycete isolated from a salt lake[J]. International journal of systematic and evolutionary microbiology, 2013, 63:3009-3013.
[10]	GUAN T W, XIA Z F, XIAO J, et al. Glycomyces halotolerans sp. nov. a novel actinomycete isolated from a hypersaline habitat in Xinjiang, China[J]. Antonie van Leeuwenhoek, 2011, 100(1):137-143.
[11]	GUAN T W, WANG P H, LEI T, et al. Glycomyces lacisalsi sp. nov. an actinomycete isolated from a hypersaline habitat[J]. International journal of systematic and evolutionary microbiology, 2016, 66(12):5366-5370.
[12]	TANG S K, ZHI X Y, WANG Y, et al. Haloactinopolyspora alba gen. nov., sp. nov., a halophilic filamentous actinomycete isolated from a salt lake, with proposal of Jiangellaceae fam. nov. and Jiangellineae subord. nov.[J]. International journal of systematic and evolutionary microbiology, 2011, 61(1):194-200.
[13]	TANG S K, WANG Y, LEE J C, et al. Georgenia halophila sp. nov. a halophilic actinobacterium isolated from a salt lake[J]. International journal of systematic and evolutionary microbiology, 2010, 60(6):1317.
[14]	TANG S K, WANG Y, SCHUMANN P, et al. Brevibacterium album sp. nov., a novel actinobacterium isolated from a saline soil in China[J]. International journal of systematic and evolutionary microbiology, 2008, 58(3):574-577.
[15]	GUAN T W, ZHAO K, XIAO J, et al. Brevibacterium salitolerans sp. nov. an actinobacterium isolated from salt-lake sediment[J]. International journal of systematic and evolutionary microbiology, 2010, 60(12):2991-5.
[16]	LI W J, CHEN H H, ZHANG Y Q, et al. Nesterenkonia halotolerans sp. nov. and Nesterenkonia xinjiangensis sp. nov. actinobacteria from saline soils in the west of China[J]. International journal of systematic and evolutionary microbiology, 2004, 54(3):837-841.
[17]	IMEN N, LORENA C, MARINA G L, et al. Genome-based taxonomic classification of the phylum Actinobacteria[J]. Frontiers in microbiology, 2018:1-119.
[18]	LI W J, ZHI X Y, EUZEBY J P. Proposal of Yaniellaceae fam. nov., Yaniella gen. nov. and Sinobaca gen. nov. as replacements for the illegitimate prokaryotic names Yaniaceae Li et al. 2005, Yania Li et al. 2004, emend Li et al. 2005, and Sinococcus Li et al. 2006, respectively[J]. International journal of systematic and evolutionary microbiology, 2008, 58(2):525-527.
[19]	WANG Y, TANG S K, LI Z, et al. Myceligenerans halotolerans sp. nov.an actinomycete isolated from a salt lake, and emended description of the genus Myceligenerans[J]. International journal of systematic and evolutionary microbiology, 2011, 61.0(4):974-8.
[20]	TANG S K, ZHI X Y, WANG Y, et al. Haloactinobacterium album gen. nov. sp. nov. a halophilic actinobacterium, and proposal of Ruaniaceae fam. nov.[J]. International journal of systematic and evolutionary microbiology, 2010, 60(9):2113.
[21]	CHEN H H, LI W J, TANG S K, et al. Corynebacterium halotolerans sp. nov. isolated from saline soil in the west of China[J]. International journal of systematic and evolutionary microbiology, 2004, 54:779.
[22]	TANG S K, WANG Y, ZHANG H, et al. Haloechinothrix alba gen. nov., sp. nov., a halophilic, filamentous actinomycete of the suborder Pseudonocardineae[J]. International journal of systematic and evolutionary microbiology, 2010, 60(9):2154-2158.
[23]	LI W J, XU P, TANG S K, et al. Prauserella halophila sp. nov. and Prauserella alba sp. nov., moderately halophilic actinomycetes from saline soil[J]. International journal of systematic and evolutionary microbiology, 2003, 53(5):1545-1549.
[24]	TANG S K, WANG Y, CAI M, et al. Saccharopolyspora halophila sp. nov., a novel halophilic actinomycete isolated from a saline lake in China[J]. International journal of systematic and evolutionary microbiology, 2009, 59 (3):555-558.
[25]	XIA Z F, RUAN J S, HUANG Y, et al. Streptomyces aidingensis sp. nov. an actinomycete isolated from lake sediment[J]. International journal of systematic and evolutionary microbiology, 2013, 63:3204-3208.
[26]	LUO X X, GAO G B, XIA Z F, et al. Streptomyces salilacus sp. nov. an actinomycete isolated from a salt lake[J]. International journal of systematic and evolutionary microbiology, 2018, 68(5):1514-1518.
[27]	ZHANG Y G, LIU Q, WANG H F, et al. Nocardiopsis ansamitocini sp. nov. a new producer of ansamitocin P-3 of the genus Nocardiopsis[J]. International journal of systematic and evolutionary microbiology, 2016, 66(1):230-235.
[28]	CAI M, TANG S K, CHEN Y G, et al. Streptomonospora amylolytica sp. nov. and Streptomonospora flavalba sp. nov. two novel halophilic actinomycetes isolated from a salt lake[J]. International journal of systematic and evolutionary microbiology, 2009, 59:2471-2475.
[29]	ZHANG Y G, CHEN J Y, AL E. Egicoccus halophilus gen. nov. sp nov. a halophilic, alkalitolerant actinobacterium and proposal of Egicoccaceae fam. nov and Egicoccales ord. nov.[J]. International journal of systematic and evolutionary microbiology, 2016, 66(2):530-535.
[30]	LI W J, CHEN H C, PARK D J, et al. Microbacterium halotolerans sp. nov. isolated from a saline soil in the west of China[J]. International journal of systematic and evolutionary microbiology, 2005, 55(1):67-70.
[31]	ZHANG Y Q, SCHUMANN P, YU L Y, et al. Zhihengliuella halotolerans gen. nov. sp. nov. a novel member of the family Micrococcaceae[J]. International journal of systematic and evolutionary microbiology, 2007, 57(5):1018-1023.
[32]	CUI X L, SCHUMANN P, STACKEBRANDT E, et al. Myceligenerans xiligouense gen. nov. sp. nov. a novel hyphae-forming member of the family Promicromonosporaceae[J]. International journal of systematic and evolutionary microbiology, 2004, 54(4):1287-1293.
[33]	ZHANG Y Q, SCHUMANN P, LI W J, et al. Isoptericola halotolerans sp. nov., a novel actinobacterium isolated from saline soil from Qinghai Province, north-west China[J]. International journal of systematic and evolutionary microbiology, 2005, 55(5):1867-1870.
[34]	LI W J, ZHANG Y G, ZHANG Y Q, et al. Streptomyces sodiiphilus sp. nov. a novel alkaliphilic actinomycete[J]. International journal of systematic and evolutionary microbiology, 2005, 55(3):1329-1333.
[35]	JIANG Y, CAO Y R, WIESE J, et al. Streptomyces sparsus sp. nov. isolated from a saline and alkaline soil[J]. International journal of systematic and evolutionary microbiology, 2011, 61(7):1601-1605.
[36]	CHEN Y G, CUI X L, KROPPENSTEDT R M, et al. Nocardiopsis quinghaiensis sp. nov. isolated from saline soil in China[J]. International journal of systematic and evolutionary microbiology, 2008, 58(3):699-705.
[37]	CHEN Y G, ZHANG Y Q, TANG S K, et al. Nocardiopsis terrae sp. nov. a halophilic actinomycete isolated from saline soil[J]. Antonie Van Leeuwenhoek, 2010, 98(1):31-38.
[38]	FENG X M, ZHAI X H, LIU S W, et al. Phytoactinopolyspora mesophila sp. nov. isolated from a saline-alkaline soil[J]. International journal of systematic and evolutionary microbiology, 2020, 70(7):4179-4185.
[39]	LI X J, LIU J M, WU Y, et al. Description of Salilacibacter albus gen. nov., sp. nov., isolated from a dried salt lake, and reclassification of Paraglycomyces xinjiangensis Luo et al. 2015 as a later heterotypic synonym of Salininema proteolyticum Nikou et al. 2015 with emended descriptions of the genus Salininema and Salininema proteolyticum[J]. International journal of systematic and evolutionary microbiology, 2016, 66(7):2558-2565
[40]	LI X J, WANG C M, FENG X M, et al. Planctomonas psychrotolerans sp. nov. isolated from rhizosphere soil of Suaeda salsa[J]. International journal of systematic and evolutionary microbiology, 2020, 70(10):5271-5279.
[41]	LI X J, LIU S W, JIANG Z K, et al. Hoyosella rhizosphaerae sp. nov. a halotolerant actinobacterium isolated from rhizosphere soil of Suaeda salsa, and emended description of the genus Hoyosella[J]. International journal of systematic and evolutionary microbiology, 2016, 66(11):4716-4722.
[42]	MING H, NIU M M, CHENG L J, et al. Isoptericola halalbus sp. nov. a halotolerant actinobacterium isolated from saline lake sediment[J]. International journal of systematic and evolutionary microbiology, 2020, 70(8):4661-4667.
[43]	LI W J, KROPPENSTEDT R M, WANG D, et al. Five novel species of the genus Nocardiopsis isolated from hypersa -line soils and emended description of Nocardiopsis salina Li et al. 2004[J]. International journal of systematic and evolutionary microbiology, 2006, 56(5):1089-1096.
[44]	SCHUMANN P, CUI X L, STACKEBRANDT E, et al. Jonesia quinghaiensis sp. nov. a new member of the suborder Micrococcineae[J]. International journal of systematic and evolutionary microbiology, 2004, 54(6):2181-2184.
[45]	HAMADA M, SHIBATA C, SAKURAI K, et al. Reclassification of Amycolicicoccus subflavus as Hoyosella subflava comb. nov. and emended descriptions of the genus Hoyosella and Hoyosella altamirensis[J]. International journal of systematic and evolutionary microbiology, 2016, 66(11):4711-4715.
[46]	CAI M, WANG L, CAI H, et al. Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov. isolated from a crude oil-contaminated saline soil[J]. International journal of systematic and evolutionary microbiology, 2011, 61(8):1767-1775
[47]	KONG D L, GUO X, ZHOU S, et al. Frigoribacterium salinisoli sp. nov., isolated from saline soil, transfer of Frigoribacterium mesophilum to Parafrigoribacterium gen. nov. as Parafrigoribacterium mesophilum comb. nov[J]. International journal of systematic and evolutionary microbiology, 2016, 66(12):5252-5259.
[48]	BAI J L, WANG Y, QIN S, et al. Nocardia jiangsuensis sp. nov. an actinomycete isolated from coastal soil[J]. International journal of systematic and evolutionary microbiology, 2016, 66(11):4633-4638.
[49]	WANG K B, ZHANG L, LIU Y S, et al. Kocuria dechangensis sp. nov. an actinobacterium isolated from saline and alkaline soils[J]. International journal of systematic and evolutionary microbiology, 2015, 65(9):3024-3030.
[50]	PAN T, HE H R, LI C, et al. Streptomyces daqingensis sp. nov. isolated from saline-alkaline soil[J]. International journal of systematic and evolutionary microbiology, 2016, 66(3):1358-1363.
[51]	YU Y, FU Y S, GUO X W, et al. Streptomyces durbertensis sp. nov. isolated from saline-alkali soil[J]. International journal of systematic and evolutionary microbiology, 2018; 68:3635-3640.
[52]	XU F J, LI Q Y, LI G D, et al. Kineococcus terrestris sp. nov. and Kineococcus aureolus sp. nov. isolated from saline sediment[J]. International journal of systematic and evolutionary microbiology, 2017, 67(11):4801-4807.
[53]	LI Q Y, RÜCKERT C, LI G D, et al. Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil[J]. International journal of systematic and evolutionary microbiology, 2020, 70(1):380-387.
[54]	JI Y, CHUNYU W X, LI E Y, et al. Phytoactinopolyspora halotolerans sp. nov., a halotolerant actinobacterium isolated from a saline soil in Xinjiang, northwest of China[J]. Antonie van Leeuwenhoek, 2018, 111(1).
[55]	ARASU M V. Hypersaline Actinomycetes and their biological applications[M]. 2016:230-245.
[56]	LI W J, PARK D J, TANG S K, et al. Nocardiopsis salina sp. nov., a novel halophilic actinomycete isolated from saline soil in China[J]. International journal of systematic and evolutionary microbiology, 2004, 54(5):1805-1809.