Chinese Agricultural Science Bulletin ›› 2023, Vol. 39 ›› Issue (34): 32-40.doi: 10.11924/j.issn.1000-6850.casb2023-0005
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WANG Jianping1(), LIU Wanhao1, SUI Yongchao2,3, TANG Meiling1,2,4, LI Jin4, XU Weihua1, SONG Zhizhong1,2,5(
)
Received:
2023-01-02
Revised:
2023-08-15
Online:
2023-12-05
Published:
2023-11-30
WANG Jianping, LIU Wanhao, SUI Yongchao, TANG Meiling, LI Jin, XU Weihua, SONG Zhizhong. Analysis of Cloning, Identification and Expression Pattern of Ferric Reduction Oxidase Genes in Grape[J]. Chinese Agricultural Science Bulletin, 2023, 39(34): 32-40.
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URL: https://www.casb.org.cn/EN/10.11924/j.issn.1000-6850.casb2023-0005
基因 | 引物序列F(5’→3’) | 引物序列R(5’→3’) |
---|---|---|
VvFRO1 | ATGGAAGCAAAGGAAGCTCTT | TCACCAGTTAAAGCTAATGGA |
VvFRO2 | ATGTCGTCGTCATCGTTACCG | TCACCAGTTAAAGCTAATGGA |
VvFRO3 | ATGAGACCGCTTCTCTTGGTG | TCACCAGCTGAAGCTTATGGA |
VvFRO4 | ATGGATCCAACGGTGAAGAAG | TCACCAGCTGAAGCTTATGGA |
VvFRO5 | ATGGATGCACCTACTCAACC | TTATAAATCAAAACTGTGGCT |
VvFRO6 | ATGGCAAAAGCTACTCTTCTG | CTAGAGTGTGAAGTTGAGGGA |
基因 | 引物序列F(5’→3’) | 引物序列R(5’→3’) |
---|---|---|
VvFRO1 | ATGGAAGCAAAGGAAGCTCTT | TCACCAGTTAAAGCTAATGGA |
VvFRO2 | ATGTCGTCGTCATCGTTACCG | TCACCAGTTAAAGCTAATGGA |
VvFRO3 | ATGAGACCGCTTCTCTTGGTG | TCACCAGCTGAAGCTTATGGA |
VvFRO4 | ATGGATCCAACGGTGAAGAAG | TCACCAGCTGAAGCTTATGGA |
VvFRO5 | ATGGATGCACCTACTCAACC | TTATAAATCAAAACTGTGGCT |
VvFRO6 | ATGGCAAAAGCTACTCTTCTG | CTAGAGTGTGAAGTTGAGGGA |
基因 | 引物序列F(5’→3’) | 引物序列R(5’→3’) |
---|---|---|
VvFRO1 | TGGAAGCAAAGGAAGCTCTTA | GAGGAGGTTGGCACCTTGTT |
VvFRO2 | GCCGTCATCCATCTCCCATC | CTCTGACCAGAGGCCGAAAG |
VvFRO3 | GCTCCTTCAACTCCGAGCAA | AGGGCTGCTTATAGACTTATTATC |
VvFRO4 | TGCTTGCCTTGATGATCTTCCT | GCCGATCTTTTGGGCTGCTTT |
VvFRO5 | CCTTTTGGAGTGGTCTCTGCT | GGCGGAGAAGAACTGATCCC |
VvFRO6 | CCAAATCATTGAAGCGGCAGT | ATCATTGCAGTCCCAAGCCA |
基因 | 引物序列F(5’→3’) | 引物序列R(5’→3’) |
---|---|---|
VvFRO1 | TGGAAGCAAAGGAAGCTCTTA | GAGGAGGTTGGCACCTTGTT |
VvFRO2 | GCCGTCATCCATCTCCCATC | CTCTGACCAGAGGCCGAAAG |
VvFRO3 | GCTCCTTCAACTCCGAGCAA | AGGGCTGCTTATAGACTTATTATC |
VvFRO4 | TGCTTGCCTTGATGATCTTCCT | GCCGATCTTTTGGGCTGCTTT |
VvFRO5 | CCTTTTGGAGTGGTCTCTGCT | GGCGGAGAAGAACTGATCCC |
VvFRO6 | CCAAATCATTGAAGCGGCAGT | ATCATTGCAGTCCCAAGCCA |
基因 | 登录号 | 染色体定位 | 编码区/bp | 氨基酸 | 内含子数目 | 基序数目 | 亚族 | 等电点 | 跨膜区 | 不稳定性指数 | 信号肽 |
---|---|---|---|---|---|---|---|---|---|---|---|
VvFRO1 | GSVIVT01028874001 | chr16:17911251..17919834 reverse | 2184 | 727 | 8 | 7 | I | 7.64 | 10 | 43.16不稳定 | 无 |
VvFRO2 | GSVIVT01028873001 | chr16:17920090..17930273 reverse | 3537 | 1178 | 13 | 7 | I | 5.17 | 11 | 36.57稳定 | 无 |
VvFRO3 | GSVIVT01026993001 | chr15:18731174..18734997 reverse | 2082 | 693 | 7 | 7 | I | 5.34 | 11 | 31.98稳定 | 无 |
VvFRO4 | GSVIVT01026991001 | chr15:18754824..18759433 reverse | 2145 | 714 | 7 | 7 | II | 7.03 | 11 | 42.54不稳定 | 无 |
VvFRO5 | GSVIVT01023105001 | chr12:22531017..22539454 forward | 2208 | 735 | 8 | 5 | II | 5.89 | 10 | 36.42稳定 | 无 |
VvFRO6 | GSVIVT01007662001 | chr17:10745402..10748530 forward | 2112 | 703 | 7 | 5 | II | 6.03 | 10 | 30.52稳定 | 无 |
基因 | 登录号 | 染色体定位 | 编码区/bp | 氨基酸 | 内含子数目 | 基序数目 | 亚族 | 等电点 | 跨膜区 | 不稳定性指数 | 信号肽 |
---|---|---|---|---|---|---|---|---|---|---|---|
VvFRO1 | GSVIVT01028874001 | chr16:17911251..17919834 reverse | 2184 | 727 | 8 | 7 | I | 7.64 | 10 | 43.16不稳定 | 无 |
VvFRO2 | GSVIVT01028873001 | chr16:17920090..17930273 reverse | 3537 | 1178 | 13 | 7 | I | 5.17 | 11 | 36.57稳定 | 无 |
VvFRO3 | GSVIVT01026993001 | chr15:18731174..18734997 reverse | 2082 | 693 | 7 | 7 | I | 5.34 | 11 | 31.98稳定 | 无 |
VvFRO4 | GSVIVT01026991001 | chr15:18754824..18759433 reverse | 2145 | 714 | 7 | 7 | II | 7.03 | 11 | 42.54不稳定 | 无 |
VvFRO5 | GSVIVT01023105001 | chr12:22531017..22539454 forward | 2208 | 735 | 8 | 5 | II | 5.89 | 10 | 36.42稳定 | 无 |
VvFRO6 | GSVIVT01007662001 | chr17:10745402..10748530 forward | 2112 | 703 | 7 | 5 | II | 6.03 | 10 | 30.52稳定 | 无 |
顺式作用元件 | VvFRO1 | VvFRO2 | VvFRO3 | VvFRO4 | VvFRO5 | VvFRO6 |
---|---|---|---|---|---|---|
光感应 | 17 | 19 | 12 | 14 | 15 | 18 |
脱落酸响应 | 1 | 3 | 1 | 2 | 2 | 2 |
热胁迫 | 2 | 2 | — | 1 | 2 | 1 |
赤霉素响应 | 2 | 3 | 1 | 2 | — | 2 |
生长素响应 | 2 | 2 | — | — | 1 | 1 |
干旱诱导 | — | 2 | 1 | 1 | 3 | — |
厌氧感应 | 1 | 3 | 1 | — | 2 | — |
防御与胁迫 | 1 | 3 | 2 | — | — | — |
低温感应 | — | 1 | — | 2 | 3 | — |
昼夜规律 | — | 1 | 2 | — | — | 1 |
乙烯响应 | — | 2 | — | — | — | — |
顺式作用元件 | VvFRO1 | VvFRO2 | VvFRO3 | VvFRO4 | VvFRO5 | VvFRO6 |
---|---|---|---|---|---|---|
光感应 | 17 | 19 | 12 | 14 | 15 | 18 |
脱落酸响应 | 1 | 3 | 1 | 2 | 2 | 2 |
热胁迫 | 2 | 2 | — | 1 | 2 | 1 |
赤霉素响应 | 2 | 3 | 1 | 2 | — | 2 |
生长素响应 | 2 | 2 | — | — | 1 | 1 |
干旱诱导 | — | 2 | 1 | 1 | 3 | — |
厌氧感应 | 1 | 3 | 1 | — | 2 | — |
防御与胁迫 | 1 | 3 | 2 | — | — | — |
低温感应 | — | 1 | — | 2 | 3 | — |
昼夜规律 | — | 1 | 2 | — | — | 1 |
乙烯响应 | — | 2 | — | — | — | — |
蛋白 | 细胞质膜 | 内质网膜 | 液泡膜 | 线粒体 | 叶绿体 | 细胞核 |
---|---|---|---|---|---|---|
VvFRO1 | 64.28 | 14.28 | 7.14 | 7.14 | — | — |
VvFRO2 | 78.57 | — | — | — | 21.42 | — |
VvFRO3 | 71.42 | 14.28 | 14.28 | — | — | 7.14 |
VvFRO4 | 78.57 | 7.14 | — | 7.14 | — | — |
VvFRO5 | 64.28 | 14.28 | 14.28 | 7.14 | — | — |
VvFRO6 | 85.71 | — | 7.14 | 7.14 | — | — |
蛋白 | 细胞质膜 | 内质网膜 | 液泡膜 | 线粒体 | 叶绿体 | 细胞核 |
---|---|---|---|---|---|---|
VvFRO1 | 64.28 | 14.28 | 7.14 | 7.14 | — | — |
VvFRO2 | 78.57 | — | — | — | 21.42 | — |
VvFRO3 | 71.42 | 14.28 | 14.28 | — | — | 7.14 |
VvFRO4 | 78.57 | 7.14 | — | 7.14 | — | — |
VvFRO5 | 64.28 | 14.28 | 14.28 | 7.14 | — | — |
VvFRO6 | 85.71 | — | 7.14 | 7.14 | — | — |
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