基于Web of Science土壤酸杆菌研究态势分析

doi:10.11924/j.issn.1000-6850.casb17080037

摘要/Abstract

摘要： 为了探究土壤酸杆菌研究的热点与趋势，旨在给相关科研人员提供一定的数据参考。本文基于Web of Science数据库，采用文献计量学方法，对世界上研究最前沿的20个研究机构、研究作者、学术期刊、学科和国家进行了文献计量学统计，进而了解土壤酸杆菌研究概况和动态。结果显示：2007—2017年土壤酸杆菌研究论文数量共1289篇；文献产出量逐年增加，2016年文献数量最高；中国、美国、德国、巴西、西班牙文献数量居世界前5位，中国文献数量最多，为423篇；中国科学院、俄罗斯科学院、南京农业大学、圣保罗大学、中国科学院大学酸杆菌文献较多；最有学术影响力的核心作者来自中国，主要核心期刊是《Microbial Ecology》、《Plos One》、《FEMS Microbial Ecology》、《Applied and Environmental Microbiology》、《Frontiers in Microbiology》；主要学科是微生物、环境生态学、生物技术与应用微生物、农学、理学相关学科。综合来看，美国、德国以及中国在土壤酸杆菌研究领域处于优势地位；研究热点是微生物学和微生物生态学。

Abstract: The aim is to study the research trends and hotspots of soil acidobacteria. Based on the Web of Science database and bibliometric, the top 20 research institutes, research authors, academic journals, disciplines and countries are analyzed. The results show that a total of 1289 articles on acidobacteria (2007-2017) have been published, and the number of the published articles shows a stable-increase trend, reaches the highest in 2016. China, United States, Germany, Brazil and Spain are the top five countries depending on the number of published articles, especially China (a total of 423). Those research institutes, including Chinese Academy of Sciences, Russian Academy of Sciences, Nanjing Agricultural University, Sao Paulo University and University of Chinese Academy of Sciences, are main research institutes that have high number of published articles around the world. The core authors with the highest academic influence are mainly from China. Microbial Ecology, Plos One, FEMS Microbial Ecology, Applied and Environmental Microbiology, Frontiers in Microbiology are the most active journals in this field. The main disciplines of acidobacteria literature are microbiology, environmental sciences ecology, biotechnology applied microbiology, agriculture, science technology and other related disciplines. Therefore, the results prove that the United States, Germany and China have obvious advantages in the research field of soil acidobacteria. The current hotspots in soil acidobacteria are microbiology and microbial ecology.

中图分类号:

Q948

隋心,李梦莎,宋福强. 基于Web of Science土壤酸杆菌研究态势分析[J]. 中国农学通报, 2017, 33(35): 63-69.

参考文献

[1]Hugenholtz P, Goebel B M, Pace N R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.[J]. Journal of Bacteriology, 1998, 180(18):4765-4774.
[2]Kishimoto N, Kosako Y, Tano T. Acidobacterium capsulatum, gen. nov. sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment[J]. Current Microbiology, 1991, 22(1):1-7.
[3]Barns S M. Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment.[J]. Applied Environmental Microbiology, 1999, 65(4):1731-1737.
[4]Ludwig W, Bauer S H, Bauer M, et al. Detection and in situ identification of representatives of a widely distributed new bacterial phylum[J]. Fems Microbiology Letters, 1997, 153(1):181-90.
[5]Janssen P H, Yates P S, Grinton B E, et al. Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia[J]. Applied Environmental Microbiology, 2002, 68(5):2391-6.
[6]Jones R T, Robeson M S, Lauber C L, et al. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses[J]. Isme Journal, 2009, 3(4):442-453.
[7]Lee S H, Ka J O, Cho J C. Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil.[J]. Fems Microbiology Letters, 2008, 285(2):263-269.
[8]孙秀焕,路文如.基于Web of Science的水稻研究态势分析[J].中国水稻科学,2012,26(5):607-614.
[9]Meho L I, Yang K. Impact of data sources on citation counts and rankings of LIS faculty: Web of Science versus Scopus and Google Scholar[J]. Journal of the American society for information science and technology, 2007,58(13):2105-2125.
[10]李雅, 刘梅, 曾全超,等. 基于文献计量的土壤有机碳与土壤微生物多样性研究前沿态势分析[J]. 土壤通报, 2017(3).
[11]吴同亮, 王玉军, 陈怀满,等. 基于文献计量学分析2016年环境土壤学研究热点[J]. 农业环境科学学报, 2017, 36(2):205-215.
[12]刘婧.文献作者分布规律研究——对近十五年来国内洛特卡定律,普赖斯定律研究成果综述[J].情报科学,2004,22(1):123-128.
[13]Xiong W, Li R, Ren Y, et al. Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium, wilt disease[J]. Soil Biology Biochemistry, 2017, 107:198-207.
[14]Wang L, Li J, Yang F, et al. Application of Bioorganic Fertilizer Significantly Increased Apple Yields and Shaped Bacterial Community Structure in Orchard Soil[J]. Microbial Ecology, 2016, 73(2):1-13.
[15]Zhao J, Zhang R, Xue C, et al. Pyrosequencing reveals contrasting soil bacterial diversity and community structure of two main winter wheat cropping systems in China.[J]. Microbial Ecology, 2014, 67(2):443-453.
[16]Shen Z, Ruan Y, Xue C, et al. Soils naturally suppressive to banana Fusarium, wilt disease harbor unique bacterial communities[J]. Plant Soil, 2015, 393(1-2):21-33.
[17]Sinninghe Damsté, J.S, Rijpstra, W.I.C, Dedysh, S.N, et al. Pheno- and Genotyping of Hopanoid Production inAcidobacteria:[J]. Frontiers in Microbiology, 2017, 8:968.
[18]Pankratov T A, Serkebaeva Y M, Kulichevskaya I S, et al. Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat[J]. Isme Journal, 2008, 2(5):551-560.
[19]Huang C, Shi Y, Sheng Z, et al. Characterization of microbial communities during start-up of integrated fixed-film activated sludge (IFAS) systems for the treatment of oil sands process-affected water (OSPW)[J]. Biochemical Engineering Journal, 2017, 122:123–132.
[20]Huang C, Shi Y, El-Din M G, et al. Performance of flocs and biofilms in integrated fixed-film activated sludge (IFAS) systems for the treatment of oil sands process-affected water (OSPW)[J]. Chemical Engineering Journal, 2017, 314:368-377.
[21]Jing Z, Xin J, Dan W, et al. Consistent effects of nitrogen fertilization on soil bacterial communities in black soils for two crop seasons in China[J]. Scientific Reports, 2017, 7(1):3267.
[22]Liu J, Li J, Wang X, et al. Rapid aerobic granulation in an SBR treating piggery wastewater by seeding sludge from a municipal WWTP[J]. 环境科学学报(英文版), 2017, 51(1):332-341.
[23]Ding J, Jiang X, Ma M, et al. Effect of 35 years inorganic fertilizer and manure amendment on structure of bacterial and archaeal communities in black soil of northeast China[J]. Applied Soil Ecology, 2016, 105:187-195.
[24]Vieira S, Luckner M, Wanner G, et al. Luteitalea pratensis gen. nov. sp. nov. a new member of subdivision 6 Acidobacteria isolated from temperate grassland soil.[J]. International Journal of Systematic Evolutionary Microbiology, 2017, 67(5):1408-1414.
[25]Dedysh S N, Kulichevskaya I S, Huber K J, et al. Defining the taxonomic status of described subdivision 3 Acidobacteria: the proposal of Bryobacteraceae fam. nov[J]. International Journal of Systematic Evolutionary Microbiology, 2016, 66: 3355-3366.
[26]Wüst P K, Foesel B U, Geppert A, et al. Brevitalea aridisoli, B. deliciosa, and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from Namibian savanna soil and description of the novel family Pyrinomonadaceae[J]. Int J Syst Evol Microbiol, 2016, 66(9): 3355-3366.
[27]Johnston E R, Rodriguez-R L M, Luo C, et al. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem:[J]. Frontiers in Microbiology, 2016, 7:579.
[28]Tu Q, Zhou X, He Z, et al. The Diversity and Co-occurrence Patterns of N?-Fixing Communities in a CO?-Enriched Grassland Ecosystem[J]. Microbial Ecology, 2016, 71(3):604-615.
[29]Wang X, Van Nostrand J D, Deng Y, et al. Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China's grasslands.[J]. Fems Microbiology Ecology, 2015, 91(12).
[30]王光华, 刘俊杰, 于镇华,等. 土壤酸杆菌门细菌生态学研究进展[J]. 生物技术通报, 2016, 32(2):14-20.
[31]Zhang T, Shao M F, Ye L. 454 pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants[J]. Isme Journal, 2012, 6(6):1137-1147.
[32]Wang Y, Sheng H F, He Y, et al. Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags[J]. Applied Environmental Microbiology, 2012, 78(23):8264-8271.
[33]Sun L, Qiu F, Zhang X, et al. Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis.[J]. Microbial Ecology, 2008, 55(3):415-424.
[34]Ge Y, Zhang J B, Zhang L M, et al. Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China[J]. Journal of Soils Sediments, 2008, 8(1):43-50.
[35]Qiu M, Zhang R, Xue C, et al. Application of bio-organic fertilizer can control Fusarium, wilt of cucumber plants by regulating microbial community of rhizosphere soil[J]. Biology Fertility of Soils, 2012, 48(7):807-816.
[36]Rui J, Peng J, Lu Y. Succession of bacterial populations during plant residue decomposition in rice field soil[J]. Applied Environmental Microbiology, 2009, 75(14): 4879-4886.
[37]Ye W J, Liu X L, Lin S Q, et al. The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu.[J]. Fems Microbiology Ecology, 2010, 70(2):107-120.