Using the seeds and plantlets of Medicago polymorpha in Shanghai as experimental materials, different concentrations of colchicine were set (0%, 0.01%, 0.03%, 0.05%, 0.07%, 0.09%, 0.11%), and plant tissue culture, plant biochemical physiology, and plant molecular biology techniques were used to investigate the effects of colchicine treatment on the germination of seeds, the growth and development of plantlets, as well as related physiological and biochemical indicators and gene expression in M. polymorpha. The results showed that the addition of colchicine and colchicine soaking to MS medium could inhibit the germination rate of M. polymorpha seeds and the plant height of germinated seedlings, reduce their leaf number, increase their stem thickness, promote their rooting, increase their CAT activity, SOD activity, POD activity, MDA content, soluble sugar content, soluble protein content, and proline content, promote their upregulation of WRKY transcription factor, protein TIFY 8, transcription factor MYB13, NAC transcription factor 47, ABC transporter, late embryogenesis rich protein 2, and ethylene responsive transcription factor ERF110 gene expression. The addition of colchicine to MS medium and soaking in colchicine could inhibit the plant height, leaf number, stem diameter, root number, and root length of plantlets of M. polymorpha, promote their increase of stem diameter, CAT activity, SOD activity, POD activity, MDA content, soluble sugar content, soluble protein content, and proline content of test tube seedlings of M. polymorpha, and promote their upregulation of gene expression of WRKY transcription factor, protein TIFY 8, transcription factor MYB13, NAC transcription factor 47, ABC transporter, late embryogenesis enriched protein 2, and ethylene responsive transcription factor ERF110. The polyploidy induction effect of M. polymorpha seeds on colchicine added medium was lower than the polyploidy induction effect of M. polymorpha seeds soaked in colchicine, the polyploidy induction effect of M. polymorpha seeds soaked in colchicine was lower than the polyploidy induction effect of M. polymorpha plantlets on colchicine added medium, the polyploidy induction effect of M. polymorpha plantlets on colchicine added medium was lower than the polyploidy induction effect of M. polymorpha plantlets soaked in colchicine. The results of this experiment had practical significance for the induction of polyploidy in M. polymorpha, and could provide theoretical support for the study of signal pathways for polyploidy induction in M. polymorpha and the application of colchicine in inducing polyploidy in M. polymorpha.