组学技术在葱属植物中的研究进展

doi:10.11924/j.issn.1000-6850.casb2023-0259

中国农学通报 ›› 2023, Vol. 39 ›› Issue (34): 22-31.doi: 10.11924/j.issn.1000-6850.casb2023-0259

组学技术在葱属植物中的研究进展

薛守宇¹^,²(), 李涛涛², 李冰冰²()

¹ 长江大学生命科学学院，湖北荆州 434025
² 河南城建学院生命科学与工程学院，河南平顶山 467041

收稿日期:2023-04-07 修回日期:2023-09-09 出版日期:2023-12-05 发布日期:2023-11-30
通讯作者:
李冰冰，女，1964年出生，河南周口人，教授，博士，研究方向：蔬菜遗传育种。通信地址：467036 河南省平顶山市新华区河南城建学院，Tel：0375-3678081，E-mail：839679437@qq.com。
作者简介:
薛守宇，男，1998年出生，河南安阳人，硕士研究生，研究方向：蔬菜遗传育种。通信地址：467036 河南省平顶山市新华区河南城建学院，E-mail：2414690953@qq.com。
基金资助:
国家自然科学基金(32100272); 河南省科技攻关项目“嗜线虫肠杆菌防止韭菜迟眼蕈蚊的技术研究与应用”(222102110001); 河南省重点研发专项项目“韭菜优异种质资源创制及优质抗病新品种的培育与示范”(221111110900)

Research Progress of Omics Techniques in Allium Plants

XUE Shouyu¹^,²(), LI Taotao², LI Bingbing²()

¹ College of Life Sciences, Yangtze University, Jingzhou, Hubei 434025
² College of Life Sciences and Engineering, Henan University of Urban Construction, Pingdingshan, Henan 467041

Received:2023-04-07 Revised:2023-09-09 Published-:2023-12-05 Online:2023-11-30

摘要/Abstract

摘要：

为加快葱属植物优良品种培育，文章归纳了近年来组学技术在葱属植物分子标记开发、雄性不育机制解析、系统发育、胁迫响应、组织和器官发育、食品加工与贮藏和医药价值开发与利用等方面的应用研究。强调了组学技术在葱属植物优良性状选择、关键基因筛选和种质资源创新中的重要性，明确了多组学在葱属植物精准育种中的优势，得出组学技术的应用极大地加快了葱属植物遗传和分子育种进程的结论。提出组学技术在葱属植物中的应用将为其他具有较大基因组的非模式植物研究提供思路，表明今后应侧重于研究葱属植物活性物质的挖掘及野生葱属植物资源的开发和利用。

关键词: 葱属, 基因组学, 转录组学, 蛋白组学, 代谢组学

Abstract:

In order to speed up the cultivation of superior varieties of Allium plants, we summarized the application research of omics technology in the development of molecular markers, male sterility, phylogeny, stress response, tissue and organ development, food processing and storage, and the development and utilization of medicinal value in the Allium plants in recent years. We emphasized the importance of omics technology in the selection of excellent traits, screening of key genes and innovation of germplasm resources in Allium plants, clarified the advantages of multi-omics in precision breeding of Allium plants, and came to the conclusion that the application of omics technology greatly accelerated the genetic and molecular breeding process of Allium plants. It was proposed that the application of omics technologies in Allium species could provide insights for research on other non-model plants with large genomes, and it was suggested that future research should focus on the discovery of bioactive substances in Allium plants and the development and utilization of wild Allium resources.

Key words: Allium, genomics, transcriptomics, proteomics, metabolomics

薛守宇, 李涛涛, 李冰冰. 组学技术在葱属植物中的研究进展[J]. 中国农学通报, 2023, 39(34): 22-31.

XUE Shouyu, LI Taotao, LI Bingbing. Research Progress of Omics Techniques in Allium Plants[J]. Chinese Agricultural Science Bulletin, 2023, 39(34): 22-31.

图/表 3

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应用	类型	物种	平台	植物组织或器官	基因	参考文献
非生物胁迫	干旱	大蒜	Illumina HiSeq	叶片	AsHEMA、AsHEMB、AsGSA、AsCHLD、AsCHLI、AsCAO	[33]
非生物胁迫	盐碱化	大蒜	Illumina HiSeq	鳞芽	AsNAC	[36]
生物胁迫	真菌	洋葱	Illumina Hiseq	叶片	JAR1、COI1、MYC2	[37]
	真菌	洋葱	Illumina Novadeq	叶片	AKR	[38]
	真菌	洋葱	Illumina HiSeq	叶片	GAT-1、ANKRD、XET、PR-5	[39]

应用	类型	物种	平台	植物组织或器官	基因	参考文献
非生物胁迫	干旱	大蒜	Illumina HiSeq	叶片	AsHEMA、AsHEMB、AsGSA、AsCHLD、AsCHLI、AsCAO	[33]
非生物胁迫	盐碱化	大蒜	Illumina HiSeq	鳞芽	AsNAC	[36]
生物胁迫	真菌	洋葱	Illumina Hiseq	叶片	JAR1、COI1、MYC2	[37]
	真菌	洋葱	Illumina Novadeq	叶片	AKR	[38]
	真菌	洋葱	Illumina HiSeq	叶片	GAT-1、ANKRD、XET、PR-5	[39]

物种	平台	植物组织或器官	基因	参考文献
洋葱	Illumina HiSeq	花	AcPMS1	[47]
洋葱	Illumina HiSeq	花药	cox1、atp9、AG、AMS、SERK1	[48]
大蒜	Illumina HiSeq	花苞	AP3、 MMD1、 MS2、GPAT2、nad7、ccmC、 18S rRNA	[51]

物种	平台	植物组织或器官	基因	参考文献
洋葱	Illumina HiSeq	花	AcPMS1	[47]
洋葱	Illumina HiSeq	花药	cox1、atp9、AG、AMS、SERK1	[48]
大蒜	Illumina HiSeq	花苞	AP3、 MMD1、 MS2、GPAT2、nad7、ccmC、 18S rRNA	[51]

物种	平台	植物组织或器官	基因	参考文献
大蒜	Illumina MiSeq	根、基底、叶片、花、鳞芽	FT	[53]
洋葱	GS-FLX	花、鳞茎	AcFT2、AcFT1、AcFT4	[54]
洋葱	Illumina HiSeq	叶片、花、根	PISTILLATA、AGAMOUS、SEPALLATA3、APETALLA3、AGAMOUS LIKE6	[56]
大蒜	Illumina HiSeq	蒜瓣茎尖	ENHYDROUS、DAG1、DAM、DTH8	[57]
大蒜	Illumina Hiseq	鳞芽	AsGA20ox、AsCyP735、AsAHK	[58]

组学技术在葱属植物中的研究进展

Research Progress of Omics Techniques in Allium Plants

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