To clarify the seasonal variation rule of soil fungal community structure and its relationship with physical and chemical properties in the swamp meadow of Napahai wetland, we took the method of diluted culture combined with morphological identification comparative analysis, to study the seasonal variation of soil fungal community structure in dry season and rainy season, and explored its relationship with physical andchemical properties. The results showed that (1) soil organic matter, total nitrogen, available nitrogen, available potassium and available phosphorus in 0-20 cm soil layer in rainy season were higher than those in dry season, but those in 20-40 cm soil layer in dry season were higher than those in rainy season, except total nitrogen; the soil bulk density and natural water content in 0-20 cm and 20-40 cm soil layer in rainy season were higher than that in dry season; (2) soil fungal diversity had significant seasonal variation, except Pielou index (JSW ), fungi number, diversity index (H '') and Margalef index (DMA ) in dry season were higher than those in rainy season of 0-20 cm soil layer, diversity index (H'' ) and Margalef index(DMA ) in dry season were higher than those in rainy season in 20-40 cm soil layer and fungi number and Pielou index (JSW ) in rainy season were higher than those in dry season; (3) morphological identification showed that: 12 genera and 11 genera of fungi were isolated in the dry season and rainy season respectively, and the community structure was similar in composition, but also had some differences,Aspergillus andPythium belonged to the dominant species in the dry season and the rainy season, Cladosporium and Cytospora Ehrenb were the genera of dry season, and Neurosporacrasa was endemic to rainy season; (4) Pearson correlation analysis showed that: soil organic matter, total nitrogen, available nitrogen, available potassium, available phosphorus, bulk density and natural water content were closely related to soil fungal community structure in dry season and rainy season. There were obvious seasonal variation characteristics of soil fungal diversity and community composition in different seasons, soil physical and chemical properties and fungal community structure were closely related, and the results provided references for studying the influence of fungal community on Napahai wetland ecosystem.