Research Status and Development Trend of Denitrifying Bacteria Based on Web of Science Database

doi:10.11924/j.issn.1000-6850.casb2022-0896

Abstract

Abstract:

In order to analyze the research progress and dynamics of denitrifying bacteria, we analyzed the research overview and development trend of denitrifying bacteria from 1990 to 2022 based on the core database of Web of Science, using tools such as VOSviewer and Citespace. The field has experienced three processes of origin, exploration and development. There are many countries involved but the cooperation is weak, among which the European countries have stronger regional cooperation and higher quality of publications; although China started late, it has developed rapidly, with a large number of publications but insufficient influence; among the core authors, academician Peng Yongzhen of China has published the most articles; and there is less cooperation and communication among the core authors. The keywords present three types of "tool-object-method", and the current research is mainly concerned with the performance of biological denitrification and dedicated to improving the denitrification efficiency of wastewater. Future research will pay more attention to the deepening and expansion of nitrogen oxide emission, the screening of new denitrifying bacteria, the development and application of denitrifying agents, research on simultaneous nitrification and denitrification, and removal of nitrate nitrogen.

Key words: denitrifying bacteria, nitrate nitrogen, Web of Science, bibliometric, knowledge graphs

CHEN Weihong, QI Baochuan, WANG Kaili, ZHANG Meng, QIAN Dayi. Research Status and Development Trend of Denitrifying Bacteria Based on Web of Science Database[J]. Chinese Agricultural Science Bulletin, 2024, 40(9): 75-82.

Figures/Tables 6

References 45

[1]	冯亮, 袁春燕, 杨超, 等. 好氧反硝化生物脱氮技术的研究进展[J]. 微生物学通报, 2020, 47:3342-54.
[2]	LOCKHART K M, KING A M, HARTER T. Identifying sources of groundwater nitrate contamination in a large alluvial groundwater basin with highly diversified intensive action[J]. Journal of contaminant hydrology, 2013, 151:140-154. doi: 10.1016/j.jconhyd.2013.05.008 URL
[3]	XU N, LIAO M, LIANG Y, et al. Biological nitrogen removal capability and pathways analysis of a novel low C/N ratio heterotrophic nitrifying and aerobic denitrifying bacterium (Bacillus thuringiensis strain WXN-23)[J]. Environmental research, 2021, 195:110797. doi: 10.1016/j.envres.2021.110797 URL
[4]	李娜, 刘来胜, 张泽中. 2株好氧反硝化菌株的分离鉴定与脱氮特性研究[J]. 环境科学与技术, 2021, 44:98-102.
[5]	ROBERTSON L A, KUENEN J G. Aerobic denitrification: a controversy revived[J]. Archives of microbiology, 1984, 139(4):351-354. doi: 10.1007/BF00408378 URL
[6]	杨婷, 辛瑜, 时祎, 等. 好氧反硝化芽孢杆菌JD-014的分离鉴定及脱氮性能[J]. 食品与生物技术学报, 2022, 41:68-76.
[7]	FENG L, YANG J, MA F, et al. Characterisation of Pseudomonas stutzeri T13 for aerobic denitrification: stoichiometry and reaction kinetics[J]. Science of the total environment, 2020, 717:135181.
[8]	QIAO Z, SUN R, WU Y, et al. Characteristics and metabolic pathway of the bacteria for heterotrophic nitrification and aerobic denitrification in aquatic ecosystems[J]. Environmental research, 2020, 191:110069.
[9]	NEDERHOF A J. Bibliometric monitoring of research performance in the social sciences and the humanities: a review[J]. Scientometrics, 2006, 66(1):81-100. doi: 10.1007/s11192-006-0007-2 URL
[10]	GARY H, GARY R, KATHLEEN B. Tracing thought through time and space: a selective review of bibliometrics in social work[J]. Social work in health care, 2005, 41(3-4).
[11]	GAEDE J, ROWLANDS I H. Visualizing social acceptance research[J]. Energy research & social science, 2018, 40:142-158.
[12]	邱均平, 杨思洛, 宋艳辉. 知识交流研究现状可视化分析[J]. 中国图书馆学报, 2012, 38:78-89.
[13]	LIU J, WANG B, LI W, et al. Removal of nitrogen from coal gasification and coke plant wastewaters in A/O submerged biofilm-activated sludge (SBF-AS) hybrid system[J]. Water science and technology, 1996, 34(10).
[14]	李映红, 张婉, 刘笑冰. 国内农业绿色发展研究演进与展望——基于VOSviewer的可视化分析[J]. 中国林业经济, 2022:49-54.
[15]	刘婧. 文献作者分布规律研究——对近十五年来国内洛特卡定律、普赖斯定律研究成果综述[J]. 情报科学, 2004:123-128.
[16]	俞显, 张文兰. 混合学习的研究现状和趋势分析[J]. 现代教育技术, 2013, 23:14-18.
[17]	ZUMFT W G. Cell biology and molecular basis of denitrification[J]. Microbiology and molecular biology reviews: MMBR, 1997, 61(4):533-616.
[18]	STAMLER J S, SINGEL D J, LOSCALZO J. Biochemistry of nitric-oxide and its redox-activated forms[J]. Science, 1992, 258(5090):1898-1902. doi: 10.1126/science.1281928 URL
[19]	WRAGE N, VELTHOF G L, VAN BEUSICHEM M L, et al. Role of nitrifier denitrification in the production of nitrous oxide[J]. Soil biology and biochemistry, 2001, 33(12-13):1723-1732. doi: 10.1016/S0038-0717(01)00096-7 URL
[20]	CONRAD R. Soil microorganisms as controllers of atmospheric trace gases (H-2, CO, CH₄, OCS, N₂O, and NO)[J]. Microbiological reviews, 1996, 60(4):609-640. doi: 10.1128/mr.60.4.609-640.1996 URL
[21]	SIGMAN D M, CASCIOTTI K L, ANDREANI M, et al. A bacterial method for the nitrogen isotopic analysis of nitrate in seawater and freshwater[J]. Analytical chemistry, 2001, 73(17):4145-4153. pmid: 11569803
[22]	ETTWIG K F, BUTLER M K, LE PASLIER D, et al. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria[J]. Nature, 2010, 464(7288):543-548. doi: 10.1038/nature08883
[23]	CASCIOTTI K L, SIGMAN D M, HASTINGS M G, et al. Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method[J]. Analytical chemistry, 2002, 74(19):4905-4912. pmid: 12380811
[24]	SPAEPEN S, VANDERLEYDEN J, REMANS R. Indole-3-acetic acid in microbial and microorganism-plant signaling[J]. FEMS microbiology reviews, 2007, 31(4):425-448. doi: 10.1111/j.1574-6976.2007.00072.x pmid: 17509086
[25]	THROBACK I N, ENWALL K, JARVIS A, et al. Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE[J]. FEMS microbiology ecology, 2004, 49(3):401-417. doi: 10.1016/j.femsec.2004.04.011 URL
[26]	RIVETT M O, BUSS S R, MORGAN P, et al. Nitrate attenuation in groundwater: a review of biogeochemical controlling processes[J]. Water research, 2008, 42(16):4215-4232. doi: 10.1016/j.watres.2008.07.020 pmid: 18721996
[27]	谢鹏昊, 张超, 文涛, 等. 基于Webofscience文献计量分析的青枯病研究进展[J]. 中国农业大学学报, 2020, 25:62-73.
[28]	CHEN C. Searching for intellectual turning points: progressive knowledge domain visualization[J]. Pnas, 2004, 101(suppl_1):5303-5310. doi: 10.1073/pnas.0307513100 URL
[29]	SANFORD R A, WAGNER D D, WU Q Z, et al. Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils[J]. PNAS, 2012, 109(48):19709-19714. doi: 10.1073/pnas.1211238109 pmid: 23150571
[30]	CASE S D C, MCNAMARA N P, REAY D S, et al. Biochar suppresses N₂O emissions while maintaining N availability in a sandy loam soil[J]. Soil biology and biochemistry, 2015, 81:178-185. doi: 10.1016/j.soilbio.2014.11.012 URL
[31]	LYCUS P, BOTHUN K L, BERGAUST L, et al. Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy[J]. The isme journal, 2017, 11(10):2219-2232. doi: 10.1038/ismej.2017.82 URL
[32]	TIAN H Q, XU R T, CANADELL J G, et al. A comprehensive quantification of global nitrous oxide sources and sinks[J]. Nature, 2020, 586(7828):248-256. doi: 10.1038/s41586-020-2780-0
[33]	ZHAO M Y, LIU D, ZHOU J, et al. Ammonium stress promotes the conversion to organic nitrogen and reduces nitrogen loss based on restructuring of bacterial communities during sludge composting[J]. Bioresource technology, 2022, 360:127547.
[34]	LING X, LU G H, XUE C W. Environmental and anthropogenic factors affect bacterial community and nitrogen removal in the Yarlung Zangbo River[J]. Environmental science and pollution research, 2022, 29(56):84590-84599. doi: 10.1007/s11356-022-21498-y
[35]	CHENG C, ZHANG J, HE Q, et al. Exploring simultaneous nitrous oxide and methane sink in wetland sediments under anoxic conditions[J]. Water research, 2021, 194(1):116958. doi: 10.1016/j.watres.2021.116958 URL
[36]	ZHONG F, YU C M, CHEN Y H, et al. Nutrient removal process and cathodic microbial community composition in integrated vertical-flow constructed wetland - microbial fuel cells filled with different substrates[J]. Frontiers in microbiology, 2020, 11:1896.
[37]	YANG N, ZHAN G Q, LI D P, et al. Complete nitrogen removal and electricity production in Thauera-dominated air-cathode single chambered microbial fuel cell[J]. Chemical engineering journal, 2019, 356:506-515. doi: 10.1016/j.cej.2018.08.161 URL
[38]	JIN P, CHEN Y Y, XU T, et al. Efficient nitrogen removal by simultaneous heterotrophic nitrifying-aerobic denitrifying bacterium in a purification tank bioreactor amended with two-stage dissolved oxygen control[J]. Bioresource technology, 2019, 281:392-400. doi: S0960-8524(19)30327-X pmid: 30831519
[39]	向钰. 不同溶解氧同步硝化反硝化脱氮效能及途径[D]. 重庆: 重庆大学, 2020.
[40]	CHEN J L, XU J, ZHANG S N, et al. Nitrogen removal characteristics of a novel heterotrophic nitrification and aerobic denitrification bacteria, Alcaligenes faecalis strain WT14[J]. Journal of environmental management, 2021, 282:111961.
[41]	LV P Y, WEI B H, MA W K, et al. Nitrogen removal characteristics of a cold-tolerant aerobic denitrification bacterium, Pseudomonas sp. 41[J]. Catalysts, 2022, 12(4):412. doi: 10.3390/catal12040412 URL
[42]	YU C, YAO Y Y, HAYES G, et al. Quantitative assessment of groundwater vulnerability using index system and transport simulation, Huangshuihe catchment, China[J]. Science of the total environment, 2010, 408(24):6108-6116. doi: 10.1016/j.scitotenv.2010.09.002 URL
[43]	WANG J L, CHU L B. Biological nitrate removal from water and wastewater by solid-phase denitrification process[J]. Biotechnology advances, 2016, 34(6):1103-1112. doi: S0734-9750(16)30088-X pmid: 27396522
[44]	胡凯耀, 王亚娥, 李杰. 浅析氮素循环机制及污水脱氮技术研究进展[J]. 应用化工, 2022, 51:1745-1750,1757.
[45]	ZHANG I H, SUSAN M, DAVIDE C, et al. Ratio of electron donor to acceptor influences metabolic specialization and denitrification dynamics in Pseudomonas aeruginosa in a mixed carbon medium[J]. Frontiers in microbiology, 2021, 12:711073.

序号	被引频次	文章标题	第一作者	年份	出版物	所属机构
1	2820	Cell biology and molecular basis of denitrification	ZUMFT W G^[17]	1997	Microbiology and molecular biology reviews	Karlsruhe Institute of Technology(Germany)
2	2416	Biochemistry of nitric oxide and its redox-activated forms	STAMLER J S^[18]	1992	Science	Harvard University(USA)
3	1389	Role of nitrifier denitrification in the production of nitrous oxide	WRAGE N^[19]	2001	Soil Biology & Biochemistry	Wageningen University & Research(Netherlands)
4	1327	Soil microorganisms as controllers of atmospheric trace gases (H-2, CO, CH₄, OCS, N₂O, and NO)	CONRAD R^[20]	1996	Microbiological Reviews	Max Planck Society(Germany)
5	1248	A bacterial method for the nitrogen isotopic analysis of nitrate in seawater and freshwater	SIGMAN DM^[21]	2001	Analytical Chemistry	Princeton University(USA)
6	1166	Nitrite-driven anaerobic methane oxidation by oxygenic bacteria	ETTWIG K F^[22]	2010	Nature	Radboud University Nijmegen(Netherlands)
7	1040	Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method	CASCIOTTI K L^[23]	2002	AnalyticalChemistry	Princeton University(USA)
8	1036	Indole-3-acetic acid in microbial and microorganism-plant signaling	SPAEPEN S^[24]	2007	FEMS microbiology reviews	KU Leuven(Belgium)
9	1028	Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE	THROBACK I N^[25]	2004	FEMS microbiology ecology	Swedish University of Agricultural Sciences(Sweden)
10	909	Nitrate attenuation in groundwater: A review of biogeochemical controlling processes	RIVETT M O^[26]	2008	Water Research	University of Birmingham(England)

序号	被引频次	文章标题	第一作者	年份	出版物	所属机构
1	2820	Cell biology and molecular basis of denitrification	ZUMFT W G^[17]	1997	Microbiology and molecular biology reviews	Karlsruhe Institute of Technology(Germany)
2	2416	Biochemistry of nitric oxide and its redox-activated forms	STAMLER J S^[18]	1992	Science	Harvard University(USA)
3	1389	Role of nitrifier denitrification in the production of nitrous oxide	WRAGE N^[19]	2001	Soil Biology & Biochemistry	Wageningen University & Research(Netherlands)
4	1327	Soil microorganisms as controllers of atmospheric trace gases (H-2, CO, CH₄, OCS, N₂O, and NO)	CONRAD R^[20]	1996	Microbiological Reviews	Max Planck Society(Germany)
5	1248	A bacterial method for the nitrogen isotopic analysis of nitrate in seawater and freshwater	SIGMAN DM^[21]	2001	Analytical Chemistry	Princeton University(USA)
6	1166	Nitrite-driven anaerobic methane oxidation by oxygenic bacteria	ETTWIG K F^[22]	2010	Nature	Radboud University Nijmegen(Netherlands)
7	1040	Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method	CASCIOTTI K L^[23]	2002	AnalyticalChemistry	Princeton University(USA)
8	1036	Indole-3-acetic acid in microbial and microorganism-plant signaling	SPAEPEN S^[24]	2007	FEMS microbiology reviews	KU Leuven(Belgium)
9	1028	Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE	THROBACK I N^[25]	2004	FEMS microbiology ecology	Swedish University of Agricultural Sciences(Sweden)
10	909	Nitrate attenuation in groundwater: A review of biogeochemical controlling processes	RIVETT M O^[26]	2008	Water Research	University of Birmingham(England)