Research Progress of Omics Techniques in Allium Plants

doi:10.11924/j.issn.1000-6850.casb2023-0259

Abstract

Abstract:

In order to speed up the cultivation of superior varieties of Allium plants, we summarized the application research of omics technology in the development of molecular markers, male sterility, phylogeny, stress response, tissue and organ development, food processing and storage, and the development and utilization of medicinal value in the Allium plants in recent years. We emphasized the importance of omics technology in the selection of excellent traits, screening of key genes and innovation of germplasm resources in Allium plants, clarified the advantages of multi-omics in precision breeding of Allium plants, and came to the conclusion that the application of omics technology greatly accelerated the genetic and molecular breeding process of Allium plants. It was proposed that the application of omics technologies in Allium species could provide insights for research on other non-model plants with large genomes, and it was suggested that future research should focus on the discovery of bioactive substances in Allium plants and the development and utilization of wild Allium resources.

Key words: Allium, genomics, transcriptomics, proteomics, metabolomics

XUE Shouyu, LI Taotao, LI Bingbing. Research Progress of Omics Techniques in Allium Plants[J]. Chinese Agricultural Science Bulletin, 2023, 39(34): 22-31.

Figures/Tables 3

References 84

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应用	类型	物种	平台	植物组织或器官	基因	参考文献
非生物胁迫	干旱	大蒜	Illumina HiSeq	叶片	AsHEMA、AsHEMB、AsGSA、AsCHLD、AsCHLI、AsCAO	[33]
非生物胁迫	盐碱化	大蒜	Illumina HiSeq	鳞芽	AsNAC	[36]
生物胁迫	真菌	洋葱	Illumina Hiseq	叶片	JAR1、COI1、MYC2	[37]
	真菌	洋葱	Illumina Novadeq	叶片	AKR	[38]
	真菌	洋葱	Illumina HiSeq	叶片	GAT-1、ANKRD、XET、PR-5	[39]

应用	类型	物种	平台	植物组织或器官	基因	参考文献
非生物胁迫	干旱	大蒜	Illumina HiSeq	叶片	AsHEMA、AsHEMB、AsGSA、AsCHLD、AsCHLI、AsCAO	[33]
非生物胁迫	盐碱化	大蒜	Illumina HiSeq	鳞芽	AsNAC	[36]
生物胁迫	真菌	洋葱	Illumina Hiseq	叶片	JAR1、COI1、MYC2	[37]
	真菌	洋葱	Illumina Novadeq	叶片	AKR	[38]
	真菌	洋葱	Illumina HiSeq	叶片	GAT-1、ANKRD、XET、PR-5	[39]

物种	平台	植物组织或器官	基因	参考文献
洋葱	Illumina HiSeq	花	AcPMS1	[47]
洋葱	Illumina HiSeq	花药	cox1、atp9、AG、AMS、SERK1	[48]
大蒜	Illumina HiSeq	花苞	AP3、 MMD1、 MS2、GPAT2、nad7、ccmC、 18S rRNA	[51]

物种	平台	植物组织或器官	基因	参考文献
洋葱	Illumina HiSeq	花	AcPMS1	[47]
洋葱	Illumina HiSeq	花药	cox1、atp9、AG、AMS、SERK1	[48]
大蒜	Illumina HiSeq	花苞	AP3、 MMD1、 MS2、GPAT2、nad7、ccmC、 18S rRNA	[51]

物种	平台	植物组织或器官	基因	参考文献
大蒜	Illumina MiSeq	根、基底、叶片、花、鳞芽	FT	[53]
洋葱	GS-FLX	花、鳞茎	AcFT2、AcFT1、AcFT4	[54]
洋葱	Illumina HiSeq	叶片、花、根	PISTILLATA、AGAMOUS、SEPALLATA3、APETALLA3、AGAMOUS LIKE6	[56]
大蒜	Illumina HiSeq	蒜瓣茎尖	ENHYDROUS、DAG1、DAM、DTH8	[57]
大蒜	Illumina Hiseq	鳞芽	AsGA20ox、AsCyP735、AsAHK	[58]