Chinese Agricultural Science Bulletin ›› 2021, Vol. 37 ›› Issue (12): 72-78.doi: 10.11924/j.issn.1000-6850.casb2020-0128
Special Issue: 生物技术
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Zhang Chengcai(), Xiang Zengxu(
)
Received:
2020-05-25
Revised:
2020-07-27
Online:
2021-04-25
Published:
2021-05-13
Contact:
Xiang Zengxu
E-mail:2018804280@njau.edu.cn;zxxiang@njau.edu.cn
CLC Number:
Zhang Chengcai, Xiang Zengxu. Test-tube Seedlings of Atractylodes lancea (Thunb.) DC: ISSR and MSAP Analysis[J]. Chinese Agricultural Science Bulletin, 2021, 37(12): 72-78.
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URL: https://www.casb.org.cn/EN/10.11924/j.issn.1000-6850.casb2020-0128
引物 | 序列 |
---|---|
0531-018 | AGAGAGAGAGAGAGAGCTTG |
834 | AGAGAGAGAGAGAGAGYT |
836 | AGAGAGAGAGAGAGAGYA |
ISSR4 | GAGAGAGAGAGAGAGAYC |
ISSR6 | GTGTGTGTGTGTGTGTYA |
ISSR7 | AGAGAGAGAGAGAGAGYC |
ISSR31 | AGAGAGAGAGAGAGAGYC |
ISSR35 | CACACACACACACACARG |
ISSR50 | GAGAGAGAGAGAGAGAC |
P10-873 | GACAGACAGACAGACA |
引物 | 序列 |
---|---|
0531-018 | AGAGAGAGAGAGAGAGCTTG |
834 | AGAGAGAGAGAGAGAGYT |
836 | AGAGAGAGAGAGAGAGYA |
ISSR4 | GAGAGAGAGAGAGAGAYC |
ISSR6 | GTGTGTGTGTGTGTGTYA |
ISSR7 | AGAGAGAGAGAGAGAGYC |
ISSR31 | AGAGAGAGAGAGAGAGYC |
ISSR35 | CACACACACACACACARG |
ISSR50 | GAGAGAGAGAGAGAGAC |
P10-873 | GACAGACAGACAGACA |
接头与引物 | 引物序列(5’-3’) |
---|---|
EcoR I 接头1 | CTCGTAGACTGCGTACC |
EcoR I 接头2 | AATTGGTACGCAGTCTAC |
HM 接头1 | GACGATGAGTCCTGAG |
HM 接头2 | CGCTCAGGACTCAT |
E00 | GACTGCGTACCAATTC |
MSP00 | GATGAGTCCTGAGCGG |
E34 | GACTGCGTACCAATTCAAT |
E38 | GACTGCGTACCAATTCACT |
E40 | GACTGCGTACCAATTCAGC |
E41 | GACTGCGTACCAATTCAGG |
E44 | GACTGCGTACCAATTCATC |
E46 | GACTGCGTACCAATTCATT |
E50 | GACTGCGTACCAATTCCAT |
E77 | GACTGCGTACCAATTCGTG |
MSP39 | GATGAGTCCTGAGCGGAGA |
MSP40 | GATGAGTCCTGAGCGGAGC |
MSP41 | GATGAGTCCTGAGCGGAGG |
MSP44 | GATGAGTCCTGAGCGGATC |
MSP50 | GATGAGTCCTGAGCGGCAT |
MSP59 | GATGAGTCCTGAGCGGCTA |
MSP60 | GATGAGTCCTGAGCGGCTC |
MSP61 | GATGAGTCCTGAGCGGCTG |
接头与引物 | 引物序列(5’-3’) |
---|---|
EcoR I 接头1 | CTCGTAGACTGCGTACC |
EcoR I 接头2 | AATTGGTACGCAGTCTAC |
HM 接头1 | GACGATGAGTCCTGAG |
HM 接头2 | CGCTCAGGACTCAT |
E00 | GACTGCGTACCAATTC |
MSP00 | GATGAGTCCTGAGCGG |
E34 | GACTGCGTACCAATTCAAT |
E38 | GACTGCGTACCAATTCACT |
E40 | GACTGCGTACCAATTCAGC |
E41 | GACTGCGTACCAATTCAGG |
E44 | GACTGCGTACCAATTCATC |
E46 | GACTGCGTACCAATTCATT |
E50 | GACTGCGTACCAATTCCAT |
E77 | GACTGCGTACCAATTCGTG |
MSP39 | GATGAGTCCTGAGCGGAGA |
MSP40 | GATGAGTCCTGAGCGGAGC |
MSP41 | GATGAGTCCTGAGCGGAGG |
MSP44 | GATGAGTCCTGAGCGGATC |
MSP50 | GATGAGTCCTGAGCGGCAT |
MSP59 | GATGAGTCCTGAGCGGCTA |
MSP60 | GATGAGTCCTGAGCGGCTC |
MSP61 | GATGAGTCCTGAGCGGCTG |
引物 | Na | Ne | H | I | 多态位点 | 多态百分数/% |
---|---|---|---|---|---|---|
0531-018 | 1.6667±0.4924 | 1.4500±0.4135 | 0.2557±0.2122 | 0.3768±0.2990 | 8 | 66.67 |
834 | 1.3750±0.5175 | 1.2920±0.4440 | 0.1579±0.2284 | 0.2277±0.3230 | 3 | 37.50 |
836 | 1.5714±0.5354 | 1.3880±0.4392 | 0.2196±0.2246 | 0.3239±0.3189 | 4 | 57.14 |
ISSR31 | 1.5455±0.5222 | 1.4352±0.4498 | 0.2368±0.2349 | 0.3399±0.3322 | 6 | 54.55 |
ISSR35 | 1.8750±0.3536 | 1.5437±0.3451 | 0.3177±0.1789 | 0.4718±0.2447 | 7 | 87.50 |
ISSR4 | 1.2500±0.5000 | 1.2455±0.4910 | 0.1239±0.2477 | 0.1721±0.3443 | 1 | 25.00 |
ISSR50 | 1.6364±0.5045 | 1.4360±0.4343 | 0.2442±0.2193 | 0.3591±0.3074 | 7 | 63.64 |
ISSR6 | 1.6667±0.5164 | 1.4520±0.4422 | 0.2561±0.2217 | 0.3777±0.3121 | 4 | 66.67 |
ISSR7 | 1.5714±0.5345 | 1.4746±0.4929 | 0.2514±0.2479 | 0.3587±0.3464 | 4 | 57.14 |
P10-873 | 1.5000±0.5477 | 1.3709±0.4305 | 0.2098±0.2345 | 0.3045±0.3371 | 3 | 50.00 |
引物 | Na | Ne | H | I | 多态位点 | 多态百分数/% |
---|---|---|---|---|---|---|
0531-018 | 1.6667±0.4924 | 1.4500±0.4135 | 0.2557±0.2122 | 0.3768±0.2990 | 8 | 66.67 |
834 | 1.3750±0.5175 | 1.2920±0.4440 | 0.1579±0.2284 | 0.2277±0.3230 | 3 | 37.50 |
836 | 1.5714±0.5354 | 1.3880±0.4392 | 0.2196±0.2246 | 0.3239±0.3189 | 4 | 57.14 |
ISSR31 | 1.5455±0.5222 | 1.4352±0.4498 | 0.2368±0.2349 | 0.3399±0.3322 | 6 | 54.55 |
ISSR35 | 1.8750±0.3536 | 1.5437±0.3451 | 0.3177±0.1789 | 0.4718±0.2447 | 7 | 87.50 |
ISSR4 | 1.2500±0.5000 | 1.2455±0.4910 | 0.1239±0.2477 | 0.1721±0.3443 | 1 | 25.00 |
ISSR50 | 1.6364±0.5045 | 1.4360±0.4343 | 0.2442±0.2193 | 0.3591±0.3074 | 7 | 63.64 |
ISSR6 | 1.6667±0.5164 | 1.4520±0.4422 | 0.2561±0.2217 | 0.3777±0.3121 | 4 | 66.67 |
ISSR7 | 1.5714±0.5345 | 1.4746±0.4929 | 0.2514±0.2479 | 0.3587±0.3464 | 4 | 57.14 |
P10-873 | 1.5000±0.5477 | 1.3709±0.4305 | 0.2098±0.2345 | 0.3045±0.3371 | 3 | 50.00 |
J | G | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |
---|---|---|---|---|---|---|---|---|---|---|
J | 1.0000 | |||||||||
G | 0.9625 | 1.0000 | ||||||||
2 | 0.9125 | 0.9500 | 1.0000 | |||||||
3 | 0.5125 | 0.4750 | 0.5000 | 1.0000 | ||||||
4 | 0.5750 | 0.5625 | 0.5875 | 0.8875 | 1.0000 | |||||
5 | 0.5875 | 0.5750 | 0.6000 | 0.8750 | 0.9875 | 1.0000 | ||||
6 | 0.5125 | 0.4750 | 0.5000 | 0.9750 | 0.8875 | 0.8750 | 1.0000 | |||
7 | 0.5000 | 0.4875 | 0.5125 | 0.9325 | 0.9250 | 0.9125 | 0.9375 | 1.0000 | ||
8 | 0.5250 | 0.5125 | 0.5375 | 0.9125 | 0.9250 | 0.9125 | 0.9125 | 0.9500 | 1.0000 | |
9 | 0.5250 | 0.4875 | 0.5125 | 0.9375 | 0.9000 | 0.8875 | 0.9375 | 0.9250 | 0.9750 | 1.0000 |
J | G | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |
---|---|---|---|---|---|---|---|---|---|---|
J | 1.0000 | |||||||||
G | 0.9625 | 1.0000 | ||||||||
2 | 0.9125 | 0.9500 | 1.0000 | |||||||
3 | 0.5125 | 0.4750 | 0.5000 | 1.0000 | ||||||
4 | 0.5750 | 0.5625 | 0.5875 | 0.8875 | 1.0000 | |||||
5 | 0.5875 | 0.5750 | 0.6000 | 0.8750 | 0.9875 | 1.0000 | ||||
6 | 0.5125 | 0.4750 | 0.5000 | 0.9750 | 0.8875 | 0.8750 | 1.0000 | |||
7 | 0.5000 | 0.4875 | 0.5125 | 0.9325 | 0.9250 | 0.9125 | 0.9375 | 1.0000 | ||
8 | 0.5250 | 0.5125 | 0.5375 | 0.9125 | 0.9250 | 0.9125 | 0.9125 | 0.9500 | 1.0000 | |
9 | 0.5250 | 0.4875 | 0.5125 | 0.9375 | 0.9000 | 0.8875 | 0.9375 | 0.9250 | 0.9750 | 1.0000 |
模式 | 带型 | 条带数及比例 | ||
---|---|---|---|---|
HapⅡ | Msp Ⅰ | J | 9 | |
1 | 1 | Ⅰ(非甲基化) | 239 | 242 |
1 | 0 | Ⅱ(半甲基化) | 102 | 155 |
0 | 1 | Ⅲ(全甲基化) | 394 | 298 |
0 | 0 | Ⅳ(超甲基化) | 408 | 448 |
总扩增带数 | 735 | 695 | ||
总甲基化带数 | 904 | 901 | ||
全甲基化带数 | 802 | 746 | ||
总甲基化率/% | 79.09 | 78.83 | ||
全甲基化率/% | 70.17 | 65.27 | ||
半甲基化率/% | 8.92 | 13.56 |
模式 | 带型 | 条带数及比例 | ||
---|---|---|---|---|
HapⅡ | Msp Ⅰ | J | 9 | |
1 | 1 | Ⅰ(非甲基化) | 239 | 242 |
1 | 0 | Ⅱ(半甲基化) | 102 | 155 |
0 | 1 | Ⅲ(全甲基化) | 394 | 298 |
0 | 0 | Ⅳ(超甲基化) | 408 | 448 |
总扩增带数 | 735 | 695 | ||
总甲基化带数 | 904 | 901 | ||
全甲基化带数 | 802 | 746 | ||
总甲基化率/% | 79.09 | 78.83 | ||
全甲基化率/% | 70.17 | 65.27 | ||
半甲基化率/% | 8.92 | 13.56 |
模式 | 类型 | 带型 | 条带数 | 百分比/% | 甲基化变化 | |||
---|---|---|---|---|---|---|---|---|
无变化 | A1 | 1 | 1 | 1 | 1 | 186 | 67.30 | 非甲基化----非甲基化 |
A2 | 1 | 0 | 1 | 0 | 42 | 半甲基化----半甲基化 | ||
A3 | 0 | 1 | 0 | 1 | 307 | 全甲基化----全甲基化 | ||
去甲基化 | B1 | 1 | 0 | 1 | 1 | 21 | 18.87 | 半甲基化----非甲基化 |
B2 | 0 | 1 | 1 | 1 | 14 | 全甲基化----非甲基化 | ||
B3 | 0 | 0 | 1 | 1 | 18 | 超甲基化----非甲基化 | ||
B4 | 0 | 0 | 1 | 0 | 48 | 超甲基化----半甲基化 | ||
B5 | 0 | 0 | 0 | 1 | 49 | 超甲基化----全甲基化 | ||
甲基化 | C1 | 1 | 1 | 1 | 0 | 11 | 13.46 | 非甲基化----半甲基化 |
C2 | 1 | 1 | 0 | 1 | 35 | 非甲基化----全甲基化 | ||
C3 | 1 | 1 | 0 | 0 | 5 | 非甲基化----超甲基化 | ||
C4 | 1 | 0 | 0 | 0 | 35 | 半甲基化----超甲基化 | ||
C5 | 0 | 1 | 0 | 0 | 21 | 全甲基化----超甲基化 |
模式 | 类型 | 带型 | 条带数 | 百分比/% | 甲基化变化 | |||
---|---|---|---|---|---|---|---|---|
无变化 | A1 | 1 | 1 | 1 | 1 | 186 | 67.30 | 非甲基化----非甲基化 |
A2 | 1 | 0 | 1 | 0 | 42 | 半甲基化----半甲基化 | ||
A3 | 0 | 1 | 0 | 1 | 307 | 全甲基化----全甲基化 | ||
去甲基化 | B1 | 1 | 0 | 1 | 1 | 21 | 18.87 | 半甲基化----非甲基化 |
B2 | 0 | 1 | 1 | 1 | 14 | 全甲基化----非甲基化 | ||
B3 | 0 | 0 | 1 | 1 | 18 | 超甲基化----非甲基化 | ||
B4 | 0 | 0 | 1 | 0 | 48 | 超甲基化----半甲基化 | ||
B5 | 0 | 0 | 0 | 1 | 49 | 超甲基化----全甲基化 | ||
甲基化 | C1 | 1 | 1 | 1 | 0 | 11 | 13.46 | 非甲基化----半甲基化 |
C2 | 1 | 1 | 0 | 1 | 35 | 非甲基化----全甲基化 | ||
C3 | 1 | 1 | 0 | 0 | 5 | 非甲基化----超甲基化 | ||
C4 | 1 | 0 | 0 | 0 | 35 | 半甲基化----超甲基化 | ||
C5 | 0 | 1 | 0 | 0 | 21 | 全甲基化----超甲基化 |
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