Application of Transcriptome Sequencing Technology in Sweetpotato (Ipomoea batatas L.) Research

doi:10.11924/j.issn.1000-6850.casb2023-0375

Abstract

Abstract:

Sweetpotato is an important food, fodder and industrial raw material crop in the world. With the rapid development of high-throughput sequencing technologies, transcriptome sequencing technology has been widely used in sweetpotato studies. To better carry out research on functional gene mining and important trait regulation mechanisms analyzing in sweetpotato using transcriptomics techniques in the future, this study analyzed the profile of sweetpotato transcriptome data shared by research institutions in various countries, and summarized the applications and achievements of transcriptome sequencing technology in researches on sweetpotato over recent years, from the aspects of response to adversity stress, tuberous root development and starch synthesis. It was pointed out that there were still deficiencies in experimental design, data mining, and practicality of research results in current sweetpotato transcriptome studies. It was proposed that in further studies, transcriptomics technologies should be integrated with other omics technologies and genetic analysis methods to promote the continuous deepening of sweetpotato research.

Key words: sweetpotato, transcriptome, growth and development, stress resistance, quality formation, high-throughput sequencing, tuberous root development, starch synthesis

LANG Tao, YANG Feiyang, PU Zhigang, ZHANG Cong, LI Ming, YU Ma, QU Huijuan, WU Jingyu, ZHANG Lu, DIAO Du, FENG Junyan. Application of Transcriptome Sequencing Technology in Sweetpotato (Ipomoea batatas L.) Research[J]. Chinese Agricultural Science Bulletin, 2024, 40(30): 94-102.

Figures/Tables 2

References 108

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国家	品种
巴巴多斯	CBS-32
巴布亚新几内亚	PI 564154 (KEANJA)
菲律宾	PI 585108 (TAINUNG 68)
乌干达	Tanzania
新喀里多尼亚	PI 318848 (Kamula Belep)
以色列	Georgia Jet
印度	PI 585061 (KALMEGH S-30)
汤加	PI 573318 (AMELIKA)、PI 585054 (HALASIKA)
秘鲁	PI 531122 (JEWEL)、PI 599387 (Jonathan)、PI 612701 (MAN LOBOR)
韩国	Juhwangmi、PI 585067 (OKINAWA 100)、Sinhwangmi、Yulmi
日本	Annouimo、Beniharuka、Kokei 14、Kyusyu166、Tamayutaka、PI 344123 (NANYO)、PI 595868 (BENIHAYATO)
美国	Beauregard、Hatteras、Nugget、PI 208886 (527)、PI 566617 (CAROMEX)、PI 566638 (JEWEL)、PI 592993 (PERLA)、PI 634379 (HAYMAN)、SC1149-19
中国	15-94、川薯218、广薯87、京薯6号、金山57、KT1、栗子香、漯徐薯8号、高自1号、台农57、新种花、徐薯18、郑薯20、ND98、HSCL8、日节成、苏薯8号、济薯26、农林54、徐薯15、徐薯22、徐薯32、福薯7-6、EC16、广薯146、宁紫1号、徐紫菜8、济薯25、济薯29、泰中6号、徐紫薯3号、浙薯81、湘薯99、浙紫薯1号、川山紫、济紫薯2号、济紫薯3号、济紫薯4号

国家	品种
巴巴多斯	CBS-32
巴布亚新几内亚	PI 564154 (KEANJA)
菲律宾	PI 585108 (TAINUNG 68)
乌干达	Tanzania
新喀里多尼亚	PI 318848 (Kamula Belep)
以色列	Georgia Jet
印度	PI 585061 (KALMEGH S-30)
汤加	PI 573318 (AMELIKA)、PI 585054 (HALASIKA)
秘鲁	PI 531122 (JEWEL)、PI 599387 (Jonathan)、PI 612701 (MAN LOBOR)
韩国	Juhwangmi、PI 585067 (OKINAWA 100)、Sinhwangmi、Yulmi
日本	Annouimo、Beniharuka、Kokei 14、Kyusyu166、Tamayutaka、PI 344123 (NANYO)、PI 595868 (BENIHAYATO)
美国	Beauregard、Hatteras、Nugget、PI 208886 (527)、PI 566617 (CAROMEX)、PI 566638 (JEWEL)、PI 592993 (PERLA)、PI 634379 (HAYMAN)、SC1149-19
中国	15-94、川薯218、广薯87、京薯6号、金山57、KT1、栗子香、漯徐薯8号、高自1号、台农57、新种花、徐薯18、郑薯20、ND98、HSCL8、日节成、苏薯8号、济薯26、农林54、徐薯15、徐薯22、徐薯32、福薯7-6、EC16、广薯146、宁紫1号、徐紫菜8、济薯25、济薯29、泰中6号、徐紫薯3号、浙薯81、湘薯99、浙紫薯1号、川山紫、济紫薯2号、济紫薯3号、济紫薯4号